Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 36206 | 0.66 | 0.50222 |
Target: 5'- -aUCACCGAGGGCGccgcgGCg-GCCGaCCu -3' miRNA: 3'- cgGGUGGCUCCUGCa----CGagCGGUaGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 40253 | 0.66 | 0.481901 |
Target: 5'- uGCCCAgcaacagaUCGAGGACaG-GCUgCGCgAUCUg -3' miRNA: 3'- -CGGGU--------GGCUCCUG-CaCGA-GCGgUAGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 23953 | 0.66 | 0.481901 |
Target: 5'- cGCCCGgCGAGGuCG-GCauUUGCCgAUUCa -3' miRNA: 3'- -CGGGUgGCUCCuGCaCG--AGCGG-UAGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 32540 | 0.66 | 0.471892 |
Target: 5'- uGCCgGCC-AGGAUGcUGC-CGCCGgcgaugCCg -3' miRNA: 3'- -CGGgUGGcUCCUGC-ACGaGCGGUa-----GG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 16771 | 0.66 | 0.481901 |
Target: 5'- -gCCACCGGcGACGUGaaggcgauggUCGCCAguugCCa -3' miRNA: 3'- cgGGUGGCUcCUGCACg---------AGCGGUa---GG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 17264 | 0.66 | 0.471892 |
Target: 5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3' miRNA: 3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 10747 | 0.66 | 0.471892 |
Target: 5'- uGCUCGCCaAGGGCGcGCUCGaCUucggCCc -3' miRNA: 3'- -CGGGUGGcUCCUGCaCGAGC-GGua--GG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 18083 | 0.67 | 0.4561 |
Target: 5'- gGgCCGCCGAagccggcgcgaaccaGGACGccuucgCGCCGUCCg -3' miRNA: 3'- -CgGGUGGCU---------------CCUGCacga--GCGGUAGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 13681 | 0.68 | 0.405017 |
Target: 5'- cGCgCACCguGAGGAUGUcgUCGgCGUCCa -3' miRNA: 3'- -CGgGUGG--CUCCUGCAcgAGCgGUAGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 33876 | 0.68 | 0.39596 |
Target: 5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3' miRNA: 3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5' |
|||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 32674 | 0.72 | 0.208579 |
Target: 5'- uGCCCGacgugaagcCCGAGcaguucgccGACGUGCUCGCCGc-- -3' miRNA: 3'- -CGGGU---------GGCUC---------CUGCACGAGCGGUagg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home