miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 5' -55.9 NC_005808.1 + 7063 0.66 0.629288
Target:  5'- cUCGGGCGGCAGCGucGUuugaacAGGcUgGCGGUu -3'
miRNA:   3'- -AGCCCGUCGUUGC--CA------UUCaGgUGCCA- -5'
26711 5' -55.9 NC_005808.1 + 7200 0.66 0.618112
Target:  5'- cCGGGaCAGC-GCGau--GUCCACGGc -3'
miRNA:   3'- aGCCC-GUCGuUGCcauuCAGGUGCCa -5'
26711 5' -55.9 NC_005808.1 + 24302 0.66 0.618112
Target:  5'- -gGGGCGGUGAgguCGGcGAGcagCCGCGGg -3'
miRNA:   3'- agCCCGUCGUU---GCCaUUCa--GGUGCCa -5'
26711 5' -55.9 NC_005808.1 + 28355 0.66 0.606948
Target:  5'- gUCGGGCAGCGcGCGGauGGuuUCCuuGGc -3'
miRNA:   3'- -AGCCCGUCGU-UGCCauUC--AGGugCCa -5'
26711 5' -55.9 NC_005808.1 + 24560 0.67 0.562608
Target:  5'- -aGcGCGGCGAUGGcGAGgccggCCACGGUc -3'
miRNA:   3'- agCcCGUCGUUGCCaUUCa----GGUGCCA- -5'
26711 5' -55.9 NC_005808.1 + 12239 0.67 0.562608
Target:  5'- cCGGcaacaGCGGCAucgaacggaucgGCGGUAGuGUCCugGGc -3'
miRNA:   3'- aGCC-----CGUCGU------------UGCCAUU-CAGGugCCa -5'
26711 5' -55.9 NC_005808.1 + 16259 0.67 0.562608
Target:  5'- aCGaGCGGC-GCGGccAGUUCGCGGUg -3'
miRNA:   3'- aGCcCGUCGuUGCCauUCAGGUGCCA- -5'
26711 5' -55.9 NC_005808.1 + 18293 0.67 0.519185
Target:  5'- gCGGGCcgguGGCGACGGUGuaauagaCACGGc -3'
miRNA:   3'- aGCCCG----UCGUUGCCAUucag---GUGCCa -5'
26711 5' -55.9 NC_005808.1 + 2363 0.67 0.519185
Target:  5'- cUGGGCaaacGGCAACGGUucGAGgCgCACGGc -3'
miRNA:   3'- aGCCCG----UCGUUGCCA--UUCaG-GUGCCa -5'
26711 5' -55.9 NC_005808.1 + 8774 0.67 0.507469
Target:  5'- uUCGGGCAGCAcGCGGcgcacgaUGGGUcggCCGCGc- -3'
miRNA:   3'- -AGCCCGUCGU-UGCC-------AUUCA---GGUGCca -5'
26711 5' -55.9 NC_005808.1 + 2408 0.68 0.466899
Target:  5'- -aGGGCGGCAAgcGUAGGUgUACGGc -3'
miRNA:   3'- agCCCGUCGUUgcCAUUCAgGUGCCa -5'
26711 5' -55.9 NC_005808.1 + 31029 0.69 0.450743
Target:  5'- cUGGGCGGCAuggcuucgaugaccgGCGGgcAGUCCuaucaGGa -3'
miRNA:   3'- aGCCCGUCGU---------------UGCCauUCAGGug---CCa -5'
26711 5' -55.9 NC_005808.1 + 8410 0.7 0.380298
Target:  5'- gUCGGGCAGCGAgc---AGUUCGCGGg -3'
miRNA:   3'- -AGCCCGUCGUUgccauUCAGGUGCCa -5'
26711 5' -55.9 NC_005808.1 + 35513 0.7 0.362562
Target:  5'- gUGGGCGcGcCGugGGUAGG-CCGCGGc -3'
miRNA:   3'- aGCCCGU-C-GUugCCAUUCaGGUGCCa -5'
26711 5' -55.9 NC_005808.1 + 14669 1.08 0.000695
Target:  5'- gUCGGGCAGCAACGGUAAGUCCACGGUg -3'
miRNA:   3'- -AGCCCGUCGUUGCCAUUCAGGUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.