miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26712 3' -55.3 NC_005808.1 + 24493 0.66 0.651352
Target:  5'- aCCGGacggcGCGAAGGCGUccuGGuucGCGCCGg-- -3'
miRNA:   3'- cGGCU-----CGCUUUCGCA---CC---UGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 37007 0.66 0.640133
Target:  5'- cGCCGAGUGGGccaaauuCGUGGAguaUGCCGg-- -3'
miRNA:   3'- -CGGCUCGCUUuc-----GCACCU---GCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 16542 0.66 0.628906
Target:  5'- cGCCGAGCGcauGGAGCGcGccCGCCGc-- -3'
miRNA:   3'- -CGGCUCGC---UUUCGCaCcuGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 5105 0.66 0.628906
Target:  5'- gGCCcAGCGuccgguGCGgcuGGCGCCGUUGa -3'
miRNA:   3'- -CGGcUCGCuuu---CGCac-CUGCGGCAAU- -5'
26712 3' -55.3 NC_005808.1 + 12031 0.66 0.617682
Target:  5'- gGCCG-GCGAGgucuugcccAGCGUGucgaagucgauGGCGCCGa-- -3'
miRNA:   3'- -CGGCuCGCUU---------UCGCAC-----------CUGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 35056 0.66 0.614316
Target:  5'- cCCGGccGCGAGccAGCGUgcggaagaacacucGGACGCCGa-- -3'
miRNA:   3'- cGGCU--CGCUU--UCGCA--------------CCUGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 20839 0.66 0.60647
Target:  5'- uGCCGGGCGGccuGUccuauGUGGACGCgGc-- -3'
miRNA:   3'- -CGGCUCGCUuu-CG-----CACCUGCGgCaau -5'
26712 3' -55.3 NC_005808.1 + 18084 0.66 0.60647
Target:  5'- cCUGGacGUGAucGGCGUGGGCGCCa--- -3'
miRNA:   3'- cGGCU--CGCUu-UCGCACCUGCGGcaau -5'
26712 3' -55.3 NC_005808.1 + 8630 0.67 0.595283
Target:  5'- gGCCGcuGCGguGGCGaGGuCGCCGg-- -3'
miRNA:   3'- -CGGCu-CGCuuUCGCaCCuGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 27728 0.67 0.594165
Target:  5'- aGCCGGGC-AAcuuaaaggcgcccAGCGUGcGGCGCUGg-- -3'
miRNA:   3'- -CGGCUCGcUU-------------UCGCAC-CUGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 29268 0.67 0.584127
Target:  5'- gGCCG-GUGucGGgGUGGACGUgGUa- -3'
miRNA:   3'- -CGGCuCGCuuUCgCACCUGCGgCAau -5'
26712 3' -55.3 NC_005808.1 + 16776 0.67 0.584127
Target:  5'- cGgCGAcGUGAAGGCGaUGGuCGCCaGUUGc -3'
miRNA:   3'- -CgGCU-CGCUUUCGC-ACCuGCGG-CAAU- -5'
26712 3' -55.3 NC_005808.1 + 28138 0.67 0.573013
Target:  5'- gGUCGGGCGgcAGCagcuugccgGUGGucagaucgaccACGCCGUUGc -3'
miRNA:   3'- -CGGCUCGCuuUCG---------CACC-----------UGCGGCAAU- -5'
26712 3' -55.3 NC_005808.1 + 25181 0.67 0.573013
Target:  5'- uGCUcaaGGGCGA---CGUGGGCGCCGc-- -3'
miRNA:   3'- -CGG---CUCGCUuucGCACCUGCGGCaau -5'
26712 3' -55.3 NC_005808.1 + 9368 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5'
26712 3' -55.3 NC_005808.1 + 9320 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5'
26712 3' -55.3 NC_005808.1 + 9032 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5'
26712 3' -55.3 NC_005808.1 + 9080 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5'
26712 3' -55.3 NC_005808.1 + 9128 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5'
26712 3' -55.3 NC_005808.1 + 9176 0.67 0.550945
Target:  5'- gGCCGugccGCGAuAGCcagcGGugGCCGUg- -3'
miRNA:   3'- -CGGCu---CGCUuUCGca--CCugCGGCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.