miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26712 5' -58.6 NC_005808.1 + 19984 0.66 0.50322
Target:  5'- aCCUGCuGCcGCGcGCGGGgcgcUUCUuCGUGc -3'
miRNA:   3'- gGGAUGuCGuCGC-CGCCC----AAGA-GCGC- -5'
26712 5' -58.6 NC_005808.1 + 25891 0.66 0.50322
Target:  5'- aCUUUGcCAGUAGCuucaGGCGGGUUucgacuugcagCUUGCGg -3'
miRNA:   3'- -GGGAU-GUCGUCG----CCGCCCAA-----------GAGCGC- -5'
26712 5' -58.6 NC_005808.1 + 12467 0.66 0.50322
Target:  5'- --gUGCAGgcCGGCGGCGuGUUCUgGCGc -3'
miRNA:   3'- gggAUGUC--GUCGCCGCcCAAGAgCGC- -5'
26712 5' -58.6 NC_005808.1 + 21450 0.66 0.452977
Target:  5'- uUCCUGCGGCGGgGGCGGcaggauGUUggcCUCGa- -3'
miRNA:   3'- -GGGAUGUCGUCgCCGCC------CAA---GAGCgc -5'
26712 5' -58.6 NC_005808.1 + 7363 0.66 0.452977
Target:  5'- aCCU-CGGCgucguucguccAGCGGCGGGcaC-CGCGg -3'
miRNA:   3'- gGGAuGUCG-----------UCGCCGCCCaaGaGCGC- -5'
26712 5' -58.6 NC_005808.1 + 30393 0.67 0.433654
Target:  5'- uCCCgaccagggGCAgGCAGC-GCGGGccgguuucgUUCUCGCa -3'
miRNA:   3'- -GGGa-------UGU-CGUCGcCGCCC---------AAGAGCGc -5'
26712 5' -58.6 NC_005808.1 + 14754 0.68 0.344751
Target:  5'- uUCUugAGCAGCGGCGcGGccggCgccacCGCGg -3'
miRNA:   3'- gGGAugUCGUCGCCGC-CCaa--Ga----GCGC- -5'
26712 5' -58.6 NC_005808.1 + 28038 0.69 0.328616
Target:  5'- gCCC---GGUAGgGGCGGGuUUCUCGUc -3'
miRNA:   3'- -GGGaugUCGUCgCCGCCC-AAGAGCGc -5'
26712 5' -58.6 NC_005808.1 + 37972 0.69 0.319206
Target:  5'- aCCCUGCGGCAGCG-CGGGccaacauuggcCUgGCu -3'
miRNA:   3'- -GGGAUGUCGUCGCcGCCCaa---------GAgCGc -5'
26712 5' -58.6 NC_005808.1 + 21814 0.75 0.128116
Target:  5'- aCCgGCAguuGCAGCGGCGGGUugcUCUUGUa -3'
miRNA:   3'- gGGaUGU---CGUCGCCGCCCA---AGAGCGc -5'
26712 5' -58.6 NC_005808.1 + 12232 1.1 0.000325
Target:  5'- aCCCUACAGCAGCGGCGGGUUCUCGCGc -3'
miRNA:   3'- -GGGAUGUCGUCGCCGCCCAAGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.