miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26713 3' -55 NC_005808.1 + 22511 0.65 0.701555
Target:  5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3'
miRNA:   3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5'
26713 3' -55 NC_005808.1 + 21441 0.65 0.701555
Target:  5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3'
miRNA:   3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5'
26713 3' -55 NC_005808.1 + 10672 0.66 0.690579
Target:  5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3'
miRNA:   3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5'
26713 3' -55 NC_005808.1 + 4111 0.66 0.690579
Target:  5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3'
miRNA:   3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5'
26713 3' -55 NC_005808.1 + 37943 0.66 0.689478
Target:  5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3'
miRNA:   3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5'
26713 3' -55 NC_005808.1 + 7587 0.66 0.689478
Target:  5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3'
miRNA:   3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5'
26713 3' -55 NC_005808.1 + 30660 0.66 0.688377
Target:  5'- aCCAauUCGUCggGCCGCuggguguagGCGGCGGg -3'
miRNA:   3'- gGGU--GGUAGa-CGGCGuaga-----UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 11485 0.66 0.687274
Target:  5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3'
miRNA:   3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 30900 0.66 0.679545
Target:  5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuugGCAGUGGu -3'
miRNA:   3'- -GGGUGGU----------AGaCGGCGU-AGA---------UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 8039 0.66 0.679545
Target:  5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3'
miRNA:   3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5'
26713 3' -55 NC_005808.1 + 26160 0.66 0.679545
Target:  5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3'
miRNA:   3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5'
26713 3' -55 NC_005808.1 + 25515 0.66 0.668464
Target:  5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3'
miRNA:   3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5'
26713 3' -55 NC_005808.1 + 28562 0.66 0.668464
Target:  5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3'
miRNA:   3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5'
26713 3' -55 NC_005808.1 + 41890 0.66 0.668464
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCc -5'
26713 3' -55 NC_005808.1 + 3544 0.66 0.646209
Target:  5'- --uGCCAgCUGCCGCcgaacagCgcaGCAGCGGg -3'
miRNA:   3'- gggUGGUaGACGGCGua-----Ga--UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 11673 0.66 0.646209
Target:  5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3'
miRNA:   3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 41598 0.66 0.646209
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 25644 0.66 0.646209
Target:  5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3'
miRNA:   3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5'
26713 3' -55 NC_005808.1 + 40679 0.66 0.645095
Target:  5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3'
miRNA:   3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5'
26713 3' -55 NC_005808.1 + 29050 0.67 0.623901
Target:  5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3'
miRNA:   3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.