miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26713 3' -55 NC_005808.1 + 10330 0.67 0.590518
Target:  5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3'
miRNA:   3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5'
26713 3' -55 NC_005808.1 + 29050 0.67 0.623901
Target:  5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3'
miRNA:   3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5'
26713 3' -55 NC_005808.1 + 27678 0.68 0.524946
Target:  5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3'
miRNA:   3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 3556 0.68 0.568427
Target:  5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3'
miRNA:   3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5'
26713 3' -55 NC_005808.1 + 24990 0.68 0.564032
Target:  5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3'
miRNA:   3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 24961 0.68 0.57945
Target:  5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3'
miRNA:   3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5'
26713 3' -55 NC_005808.1 + 16831 0.68 0.57945
Target:  5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3'
miRNA:   3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5'
26713 3' -55 NC_005808.1 + 4023 0.68 0.535709
Target:  5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3'
miRNA:   3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5'
26713 3' -55 NC_005808.1 + 26522 0.68 0.546549
Target:  5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3'
miRNA:   3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 12997 0.68 0.524946
Target:  5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3'
miRNA:   3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 15006 0.68 0.568427
Target:  5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3'
miRNA:   3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5'
26713 3' -55 NC_005808.1 + 36682 0.69 0.510018
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 1131 0.69 0.482786
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 27361 0.69 0.472499
Target:  5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3'
miRNA:   3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5'
26713 3' -55 NC_005808.1 + 30141 0.7 0.432514
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26713 3' -55 NC_005808.1 + 25588 0.7 0.452266
Target:  5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3'
miRNA:   3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 36803 0.7 0.462324
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 6886 0.7 0.43154
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26713 3' -55 NC_005808.1 + 34096 0.71 0.391816
Target:  5'- gCCCACCcgcAUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGG---UAGACG--------------GCGUAGaUGuCGCC- -5'
26713 3' -55 NC_005808.1 + 6151 0.71 0.403856
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.