Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 7587 | 0.66 | 0.689478 |
Target: 5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3' miRNA: 3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 4111 | 0.66 | 0.690579 |
Target: 5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3' miRNA: 3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 10672 | 0.66 | 0.690579 |
Target: 5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3' miRNA: 3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25644 | 0.66 | 0.646209 |
Target: 5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3' miRNA: 3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26160 | 0.66 | 0.679545 |
Target: 5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3' miRNA: 3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 28562 | 0.66 | 0.668464 |
Target: 5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3' miRNA: 3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25515 | 0.66 | 0.668464 |
Target: 5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3' miRNA: 3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 41598 | 0.66 | 0.646209 |
Target: 5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3' miRNA: 3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 11673 | 0.66 | 0.646209 |
Target: 5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3' miRNA: 3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 37943 | 0.66 | 0.689478 |
Target: 5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3' miRNA: 3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 22511 | 0.65 | 0.701555 |
Target: 5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3' miRNA: 3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 21441 | 0.65 | 0.701555 |
Target: 5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3' miRNA: 3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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