miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26713 3' -55 NC_005808.1 + 12026 1.12 0.000563
Target:  5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 25472 0.76 0.182939
Target:  5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3'
miRNA:   3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5'
26713 3' -55 NC_005808.1 + 672 0.76 0.193196
Target:  5'- gCCACCAg--GCCGC--CUACGGCGGc -3'
miRNA:   3'- gGGUGGUagaCGGCGuaGAUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 5793 0.75 0.215227
Target:  5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3'
miRNA:   3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5'
26713 3' -55 NC_005808.1 + 31900 0.74 0.265749
Target:  5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3'
miRNA:   3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5'
26713 3' -55 NC_005808.1 + 17620 0.74 0.265749
Target:  5'- aCCgGCCucgauGUUUGCCGCAUCgUGCGGCa- -3'
miRNA:   3'- -GGgUGG-----UAGACGGCGUAG-AUGUCGcc -5'
26713 3' -55 NC_005808.1 + 26453 0.73 0.287038
Target:  5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3'
miRNA:   3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5'
26713 3' -55 NC_005808.1 + 16426 0.73 0.287038
Target:  5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3'
miRNA:   3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5'
26713 3' -55 NC_005808.1 + 33822 0.73 0.294426
Target:  5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3'
miRNA:   3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5'
26713 3' -55 NC_005808.1 + 18045 0.72 0.324652
Target:  5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3'
miRNA:   3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5'
26713 3' -55 NC_005808.1 + 39041 0.72 0.325457
Target:  5'- gCCCAgCCcgCUGCUGCG-CUGuuCGGCGGc -3'
miRNA:   3'- -GGGU-GGuaGACGGCGUaGAU--GUCGCC- -5'
26713 3' -55 NC_005808.1 + 21738 0.72 0.350284
Target:  5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3'
miRNA:   3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5'
26713 3' -55 NC_005808.1 + 34096 0.71 0.391816
Target:  5'- gCCCACCcgcAUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGG---UAGACG--------------GCGUAGaUGuCGCC- -5'
26713 3' -55 NC_005808.1 + 6151 0.71 0.403856
Target:  5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3'
miRNA:   3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5'
26713 3' -55 NC_005808.1 + 6886 0.7 0.43154
Target:  5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3'
miRNA:   3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5'
26713 3' -55 NC_005808.1 + 30141 0.7 0.432514
Target:  5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3'
miRNA:   3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5'
26713 3' -55 NC_005808.1 + 25588 0.7 0.452266
Target:  5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3'
miRNA:   3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 36803 0.7 0.462324
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 27361 0.69 0.472499
Target:  5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3'
miRNA:   3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5'
26713 3' -55 NC_005808.1 + 1131 0.69 0.482786
Target:  5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3'
miRNA:   3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.