Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 16831 | 0.68 | 0.57945 |
Target: 5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3' miRNA: 3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 17620 | 0.74 | 0.265749 |
Target: 5'- aCCgGCCucgauGUUUGCCGCAUCgUGCGGCa- -3' miRNA: 3'- -GGgUGG-----UAGACGGCGUAG-AUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 18045 | 0.72 | 0.324652 |
Target: 5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3' miRNA: 3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 21441 | 0.65 | 0.701555 |
Target: 5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3' miRNA: 3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 21738 | 0.72 | 0.350284 |
Target: 5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3' miRNA: 3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 22511 | 0.65 | 0.701555 |
Target: 5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3' miRNA: 3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 24961 | 0.68 | 0.57945 |
Target: 5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3' miRNA: 3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 24990 | 0.68 | 0.564032 |
Target: 5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3' miRNA: 3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25472 | 0.76 | 0.182939 |
Target: 5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3' miRNA: 3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25515 | 0.66 | 0.668464 |
Target: 5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3' miRNA: 3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25588 | 0.7 | 0.452266 |
Target: 5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3' miRNA: 3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25644 | 0.66 | 0.646209 |
Target: 5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3' miRNA: 3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26160 | 0.66 | 0.679545 |
Target: 5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3' miRNA: 3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26453 | 0.73 | 0.287038 |
Target: 5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3' miRNA: 3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26522 | 0.68 | 0.546549 |
Target: 5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3' miRNA: 3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 27361 | 0.69 | 0.472499 |
Target: 5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3' miRNA: 3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 27678 | 0.68 | 0.524946 |
Target: 5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3' miRNA: 3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 28562 | 0.66 | 0.668464 |
Target: 5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3' miRNA: 3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 29050 | 0.67 | 0.623901 |
Target: 5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3' miRNA: 3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 30141 | 0.7 | 0.432514 |
Target: 5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3' miRNA: 3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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