miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26713 3' -55 NC_005808.1 + 30660 0.66 0.688377
Target:  5'- aCCAauUCGUCggGCCGCuggguguagGCGGCGGg -3'
miRNA:   3'- gGGU--GGUAGa-CGGCGuaga-----UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 30900 0.66 0.679545
Target:  5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuugGCAGUGGu -3'
miRNA:   3'- -GGGUGGU----------AGaCGGCGU-AGA---------UGUCGCC- -5'
26713 3' -55 NC_005808.1 + 31900 0.74 0.265749
Target:  5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3'
miRNA:   3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5'
26713 3' -55 NC_005808.1 + 33822 0.73 0.294426
Target:  5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3'
miRNA:   3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5'
26713 3' -55 NC_005808.1 + 34096 0.71 0.391816
Target:  5'- gCCCACCcgcAUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3'
miRNA:   3'- -GGGUGG---UAGACG--------------GCGUAGaUGuCGCC- -5'
26713 3' -55 NC_005808.1 + 36682 0.69 0.510018
Target:  5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3'
miRNA:   3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 36803 0.7 0.462324
Target:  5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3'
miRNA:   3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 37943 0.66 0.689478
Target:  5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3'
miRNA:   3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5'
26713 3' -55 NC_005808.1 + 39041 0.72 0.325457
Target:  5'- gCCCAgCCcgCUGCUGCG-CUGuuCGGCGGc -3'
miRNA:   3'- -GGGU-GGuaGACGGCGUaGAU--GUCGCC- -5'
26713 3' -55 NC_005808.1 + 40679 0.66 0.645095
Target:  5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3'
miRNA:   3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5'
26713 3' -55 NC_005808.1 + 41598 0.66 0.646209
Target:  5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3'
miRNA:   3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5'
26713 3' -55 NC_005808.1 + 41890 0.66 0.668464
Target:  5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGc -3'
miRNA:   3'- -GGGuGGUAGa---CGgCGUAGAugUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.