Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 41890 | 0.66 | 0.668464 |
Target: 5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGc -3' miRNA: 3'- -GGGuGGUAGa---CGgCGUAGAugUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 41598 | 0.66 | 0.646209 |
Target: 5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3' miRNA: 3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 40679 | 0.66 | 0.645095 |
Target: 5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3' miRNA: 3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 39041 | 0.72 | 0.325457 |
Target: 5'- gCCCAgCCcgCUGCUGCG-CUGuuCGGCGGc -3' miRNA: 3'- -GGGU-GGuaGACGGCGUaGAU--GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 37943 | 0.66 | 0.689478 |
Target: 5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3' miRNA: 3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 36803 | 0.7 | 0.462324 |
Target: 5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3' miRNA: 3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 36682 | 0.69 | 0.510018 |
Target: 5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3' miRNA: 3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 34096 | 0.71 | 0.391816 |
Target: 5'- gCCCACCcgcAUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3' miRNA: 3'- -GGGUGG---UAGACG--------------GCGUAGaUGuCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 33822 | 0.73 | 0.294426 |
Target: 5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3' miRNA: 3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 31900 | 0.74 | 0.265749 |
Target: 5'- uUCCGCCAUCgagGCCGagugcCUGCGGCGu -3' miRNA: 3'- -GGGUGGUAGa--CGGCgua--GAUGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 30900 | 0.66 | 0.679545 |
Target: 5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuugGCAGUGGu -3' miRNA: 3'- -GGGUGGU----------AGaCGGCGU-AGA---------UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 30660 | 0.66 | 0.688377 |
Target: 5'- aCCAauUCGUCggGCCGCuggguguagGCGGCGGg -3' miRNA: 3'- gGGU--GGUAGa-CGGCGuaga-----UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 30141 | 0.7 | 0.432514 |
Target: 5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3' miRNA: 3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 29050 | 0.67 | 0.623901 |
Target: 5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3' miRNA: 3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 28562 | 0.66 | 0.668464 |
Target: 5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3' miRNA: 3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 27678 | 0.68 | 0.524946 |
Target: 5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3' miRNA: 3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 27361 | 0.69 | 0.472499 |
Target: 5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3' miRNA: 3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26522 | 0.68 | 0.546549 |
Target: 5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3' miRNA: 3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26453 | 0.73 | 0.287038 |
Target: 5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3' miRNA: 3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26160 | 0.66 | 0.679545 |
Target: 5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3' miRNA: 3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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