Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 25644 | 0.66 | 0.646209 |
Target: 5'- gUCCACCucggcgaguUCUGCCGgCGUCaUGuacgucaucagcCGGCGGa -3' miRNA: 3'- -GGGUGGu--------AGACGGC-GUAG-AU------------GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25588 | 0.7 | 0.452266 |
Target: 5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3' miRNA: 3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25515 | 0.66 | 0.668464 |
Target: 5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3' miRNA: 3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25472 | 0.76 | 0.182939 |
Target: 5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3' miRNA: 3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 24990 | 0.68 | 0.564032 |
Target: 5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3' miRNA: 3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 24961 | 0.68 | 0.57945 |
Target: 5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3' miRNA: 3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 22511 | 0.65 | 0.701555 |
Target: 5'- gCCCGCCAUCauccCCGCAgcgagCacgcGCAGCGc -3' miRNA: 3'- -GGGUGGUAGac--GGCGUa----Ga---UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 21738 | 0.72 | 0.350284 |
Target: 5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3' miRNA: 3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 21441 | 0.65 | 0.701555 |
Target: 5'- gCCCugCAUuucCUGCgGCGgggGCGGCaGGa -3' miRNA: 3'- -GGGugGUA---GACGgCGUagaUGUCG-CC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 18045 | 0.72 | 0.324652 |
Target: 5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3' miRNA: 3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 17620 | 0.74 | 0.265749 |
Target: 5'- aCCgGCCucgauGUUUGCCGCAUCgUGCGGCa- -3' miRNA: 3'- -GGgUGG-----UAGACGGCGUAG-AUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 16831 | 0.68 | 0.57945 |
Target: 5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3' miRNA: 3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 16426 | 0.73 | 0.287038 |
Target: 5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3' miRNA: 3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 15006 | 0.68 | 0.568427 |
Target: 5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3' miRNA: 3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 12997 | 0.68 | 0.524946 |
Target: 5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3' miRNA: 3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 12292 | 0.67 | 0.612753 |
Target: 5'- gCCCAgCG--UGCCGg--CUACGGCGGc -3' miRNA: 3'- -GGGUgGUagACGGCguaGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 12026 | 1.12 | 0.000563 |
Target: 5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3' miRNA: 3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 11673 | 0.66 | 0.646209 |
Target: 5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3' miRNA: 3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 11485 | 0.66 | 0.687274 |
Target: 5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3' miRNA: 3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 10672 | 0.66 | 0.690579 |
Target: 5'- gCCGCCGUgUccaGuuGCGUCUugacgGCAGCGc -3' miRNA: 3'- gGGUGGUAgA---CggCGUAGA-----UGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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