Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 10330 | 0.67 | 0.590518 |
Target: 5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3' miRNA: 3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 8039 | 0.66 | 0.679545 |
Target: 5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3' miRNA: 3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 7587 | 0.66 | 0.689478 |
Target: 5'- gCCGCCgcguagggucaggGUCUGUC-CGUCUGCcGUGGu -3' miRNA: 3'- gGGUGG-------------UAGACGGcGUAGAUGuCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 6886 | 0.7 | 0.43154 |
Target: 5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3' miRNA: 3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 6151 | 0.71 | 0.403856 |
Target: 5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3' miRNA: 3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 5793 | 0.75 | 0.215227 |
Target: 5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3' miRNA: 3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 4111 | 0.66 | 0.690579 |
Target: 5'- uUCCGCCA---GCCuGCG-CUGCAGCGu -3' miRNA: 3'- -GGGUGGUagaCGG-CGUaGAUGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 4023 | 0.68 | 0.535709 |
Target: 5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3' miRNA: 3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 3556 | 0.68 | 0.568427 |
Target: 5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3' miRNA: 3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 3544 | 0.66 | 0.646209 |
Target: 5'- --uGCCAgCUGCCGCcgaacagCgcaGCAGCGGg -3' miRNA: 3'- gggUGGUaGACGGCGua-----Ga--UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 1131 | 0.69 | 0.482786 |
Target: 5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3' miRNA: 3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 672 | 0.76 | 0.193196 |
Target: 5'- gCCACCAg--GCCGC--CUACGGCGGc -3' miRNA: 3'- gGGUGGUagaCGGCGuaGAUGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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