Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 21738 | 0.72 | 0.350284 |
Target: 5'- gCCACCGUUgggcgcgGCCGCGUCcACAuaGGa -3' miRNA: 3'- gGGUGGUAGa------CGGCGUAGaUGUcgCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 34096 | 0.71 | 0.391816 |
Target: 5'- gCCCACCcgcAUCUGCauuucuucauuacuCGCGUCgGCuGCGGc -3' miRNA: 3'- -GGGUGG---UAGACG--------------GCGUAGaUGuCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 6886 | 0.7 | 0.43154 |
Target: 5'- gUCCACCAUCUGCUGgCAUCgcaucauCAggaaauaggcauuGCGGc -3' miRNA: 3'- -GGGUGGUAGACGGC-GUAGau-----GU-------------CGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 30141 | 0.7 | 0.432514 |
Target: 5'- gCCGCCGgcCUGCacCGCGUCggacauCAGCGGc -3' miRNA: 3'- gGGUGGUa-GACG--GCGUAGau----GUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 25588 | 0.7 | 0.452266 |
Target: 5'- gCCGCgGUCUGCgGCccagGCAGUGGc -3' miRNA: 3'- gGGUGgUAGACGgCGuagaUGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 36803 | 0.7 | 0.462324 |
Target: 5'- aUCCGCUGgcgCUGCCGCG---AUGGCGGg -3' miRNA: 3'- -GGGUGGUa--GACGGCGUagaUGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 24990 | 0.68 | 0.564032 |
Target: 5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3' miRNA: 3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 4023 | 0.68 | 0.535709 |
Target: 5'- gCCACCAgcgUCaUGCCGCgcggGUCgagcGCAGcCGGg -3' miRNA: 3'- gGGUGGU---AG-ACGGCG----UAGa---UGUC-GCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 27678 | 0.68 | 0.524946 |
Target: 5'- cUCCACCgugGUCUuggaauacagGCCGCG-CgccgGCAGCGGc -3' miRNA: 3'- -GGGUGG---UAGA----------CGGCGUaGa---UGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 12997 | 0.68 | 0.524946 |
Target: 5'- gCCCGCCGUUcucguacagGCCGCGcagcGCAGUGGc -3' miRNA: 3'- -GGGUGGUAGa--------CGGCGUaga-UGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 36682 | 0.69 | 0.510018 |
Target: 5'- gCCGCCAgcggcgaaaagaUGCCGgAcgaUCUGCGGUGGg -3' miRNA: 3'- gGGUGGUag----------ACGGCgU---AGAUGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 1131 | 0.69 | 0.482786 |
Target: 5'- gCCCgguguaACCGUUaGCuCGCG-CUACGGCGGc -3' miRNA: 3'- -GGG------UGGUAGaCG-GCGUaGAUGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 39041 | 0.72 | 0.325457 |
Target: 5'- gCCCAgCCcgCUGCUGCG-CUGuuCGGCGGc -3' miRNA: 3'- -GGGU-GGuaGACGGCGUaGAU--GUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 18045 | 0.72 | 0.324652 |
Target: 5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3' miRNA: 3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 33822 | 0.73 | 0.294426 |
Target: 5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3' miRNA: 3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 16426 | 0.73 | 0.287038 |
Target: 5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3' miRNA: 3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 26453 | 0.73 | 0.287038 |
Target: 5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3' miRNA: 3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 5793 | 0.75 | 0.215227 |
Target: 5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3' miRNA: 3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 25472 | 0.76 | 0.182939 |
Target: 5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3' miRNA: 3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5' |
|||||||
26713 | 3' | -55 | NC_005808.1 | + | 37943 | 0.66 | 0.689478 |
Target: 5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3' miRNA: 3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home