Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 12026 | 1.12 | 0.000563 |
Target: 5'- gCCCACCAUCUGCCGCAUCUACAGCGGc -3' miRNA: 3'- -GGGUGGUAGACGGCGUAGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 41890 | 0.66 | 0.668464 |
Target: 5'- gCCC-CUAUCcuggGCgGUAUCUugGGCGc -3' miRNA: 3'- -GGGuGGUAGa---CGgCGUAGAugUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 30900 | 0.66 | 0.679545 |
Target: 5'- cCUCGCCAagcggcuaagUCcGCCGCAgUCUgacaccuugGCAGUGGu -3' miRNA: 3'- -GGGUGGU----------AGaCGGCGU-AGA---------UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 37943 | 0.66 | 0.689478 |
Target: 5'- gCCCGCCAacaaccuguccgaUCuUGCCGaccCUGCGGCa- -3' miRNA: 3'- -GGGUGGU-------------AG-ACGGCguaGAUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 16426 | 0.73 | 0.287038 |
Target: 5'- gCCACCGaaaUCUGCgacCGCAUCgcagACGGCGa -3' miRNA: 3'- gGGUGGU---AGACG---GCGUAGa---UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 33822 | 0.73 | 0.294426 |
Target: 5'- aCCCAUCGUgcGCCGCGUgCUGCccgaAGCGGc -3' miRNA: 3'- -GGGUGGUAgaCGGCGUA-GAUG----UCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 39041 | 0.72 | 0.325457 |
Target: 5'- gCCCAgCCcgCUGCUGCG-CUGuuCGGCGGc -3' miRNA: 3'- -GGGU-GGuaGACGGCGUaGAU--GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 6151 | 0.71 | 0.403856 |
Target: 5'- aCCCACUcgCcGCCGuCAUCUuccCAGCGc -3' miRNA: 3'- -GGGUGGuaGaCGGC-GUAGAu--GUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 15006 | 0.68 | 0.568427 |
Target: 5'- aCCaCGCCAUCUGgCGCcgcCUGCuGCcGGu -3' miRNA: 3'- -GG-GUGGUAGACgGCGua-GAUGuCG-CC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 16831 | 0.68 | 0.57945 |
Target: 5'- gCgGCCAUCguUGCCGCcgCccaGCAGCGc -3' miRNA: 3'- gGgUGGUAG--ACGGCGuaGa--UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26522 | 0.68 | 0.546549 |
Target: 5'- aCgACCAUCUacggcGCCGCGc--GCGGCGGc -3' miRNA: 3'- gGgUGGUAGA-----CGGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25472 | 0.76 | 0.182939 |
Target: 5'- cCUCGCCAUCUGCCGCAaCUuc-GUGGu -3' miRNA: 3'- -GGGUGGUAGACGGCGUaGAuguCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 24961 | 0.68 | 0.57945 |
Target: 5'- gUgGCCGUaCUGCCGCAcgaUGCGGCa- -3' miRNA: 3'- gGgUGGUA-GACGGCGUag-AUGUCGcc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 5793 | 0.75 | 0.215227 |
Target: 5'- uCCCGCCAUC-GCgGCAgCgcCAGCGGa -3' miRNA: 3'- -GGGUGGUAGaCGgCGUaGauGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 27361 | 0.69 | 0.472499 |
Target: 5'- gCCgACCcUCUGCCGUugaugaucguGUCgauguCGGCGGa -3' miRNA: 3'- -GGgUGGuAGACGGCG----------UAGau---GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 40679 | 0.66 | 0.645095 |
Target: 5'- gCCCACCcacaagCUGCUGCGcaaguccUCggucaAGCGGg -3' miRNA: 3'- -GGGUGGua----GACGGCGU-------AGaug--UCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 11485 | 0.66 | 0.687274 |
Target: 5'- cCCCGCUAUCUcgcaccacucgccgGCCuGCAcCgaggugaGCAGCGGc -3' miRNA: 3'- -GGGUGGUAGA--------------CGG-CGUaGa------UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26453 | 0.73 | 0.287038 |
Target: 5'- aCCACCAUCagcgugcgGCCGCAgucCUACGuCGGg -3' miRNA: 3'- gGGUGGUAGa-------CGGCGUa--GAUGUcGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 18045 | 0.72 | 0.324652 |
Target: 5'- cCUCGCCAUC-GCCGCG-CUGCGcgaccacGCGGu -3' miRNA: 3'- -GGGUGGUAGaCGGCGUaGAUGU-------CGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 3556 | 0.68 | 0.568427 |
Target: 5'- uCCCGCCAaCcgcGCCGCAUaaauuuCAGCGa -3' miRNA: 3'- -GGGUGGUaGa--CGGCGUAgau---GUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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