Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26713 | 3' | -55 | NC_005808.1 | + | 24990 | 0.68 | 0.564032 |
Target: 5'- aCCCACCAgcacaaaggggGCCGacg--ACAGCGGg -3' miRNA: 3'- -GGGUGGUaga--------CGGCguagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 8039 | 0.66 | 0.679545 |
Target: 5'- gCCGCCGUCcuUGCCGcCGUCcaugACGcGCGc -3' miRNA: 3'- gGGUGGUAG--ACGGC-GUAGa---UGU-CGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 26160 | 0.66 | 0.679545 |
Target: 5'- gCUCGCCGUCUGCgaugcgguCGCAgauuuCGGUGGc -3' miRNA: 3'- -GGGUGGUAGACG--------GCGUagau-GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 28562 | 0.66 | 0.668464 |
Target: 5'- gCCgGCCAUCgcgGCgCGCAcgUCggccaccgGCAGCGu -3' miRNA: 3'- -GGgUGGUAGa--CG-GCGU--AGa-------UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 25515 | 0.66 | 0.668464 |
Target: 5'- gCCCGCgAugaggucgguUUUGCCGCcgCcgGCAGCGc -3' miRNA: 3'- -GGGUGgU----------AGACGGCGuaGa-UGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 41598 | 0.66 | 0.646209 |
Target: 5'- cCCgGCCAg-UGgCGCGg--GCAGCGGg -3' miRNA: 3'- -GGgUGGUagACgGCGUagaUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 11673 | 0.66 | 0.646209 |
Target: 5'- -aCACCA-CUGCCcaagGUGUCagacUGCGGCGGa -3' miRNA: 3'- ggGUGGUaGACGG----CGUAG----AUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 3544 | 0.66 | 0.646209 |
Target: 5'- --uGCCAgCUGCCGCcgaacagCgcaGCAGCGGg -3' miRNA: 3'- gggUGGUaGACGGCGua-----Ga--UGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 29050 | 0.67 | 0.623901 |
Target: 5'- aCCCACCGgcgGCuCGUAggccauCAGCGGg -3' miRNA: 3'- -GGGUGGUagaCG-GCGUagau--GUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 12292 | 0.67 | 0.612753 |
Target: 5'- gCCCAgCG--UGCCGg--CUACGGCGGc -3' miRNA: 3'- -GGGUgGUagACGGCguaGAUGUCGCC- -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 10330 | 0.67 | 0.590518 |
Target: 5'- gCCagGCCGUa-GCCGUcgCUGCGGCGu -3' miRNA: 3'- gGG--UGGUAgaCGGCGuaGAUGUCGCc -5' |
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26713 | 3' | -55 | NC_005808.1 | + | 672 | 0.76 | 0.193196 |
Target: 5'- gCCACCAg--GCCGC--CUACGGCGGc -3' miRNA: 3'- gGGUGGUagaCGGCGuaGAUGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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