miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26713 5' -54.8 NC_005808.1 + 1972 0.66 0.697789
Target:  5'- cCCCGCGAUACGGgcgccaccugcCGUGGcugaucUUGAGGc- -3'
miRNA:   3'- uGGGCGCUAUGUC-----------GCACC------AGCUCUuc -5'
26713 5' -54.8 NC_005808.1 + 14376 0.66 0.686728
Target:  5'- gACCCGCGcguggucguCGGCGUGGcCGAc--- -3'
miRNA:   3'- -UGGGCGCuau------GUCGCACCaGCUcuuc -5'
26713 5' -54.8 NC_005808.1 + 26842 0.66 0.683399
Target:  5'- cGCCC-CGAUGgAGCGggcgaauuggguaaUGGUCGgcGGAAGc -3'
miRNA:   3'- -UGGGcGCUAUgUCGC--------------ACCAGC--UCUUC- -5'
26713 5' -54.8 NC_005808.1 + 17834 0.66 0.639815
Target:  5'- gACCCGUGGcaggucauuccgACAGCaugGGUCGAGGc- -3'
miRNA:   3'- -UGGGCGCUa-----------UGUCGca-CCAGCUCUuc -5'
26713 5' -54.8 NC_005808.1 + 14421 0.67 0.630839
Target:  5'- cACCUGCuGGgcgugggcaACGGCGUGGUCGAu--- -3'
miRNA:   3'- -UGGGCG-CUa--------UGUCGCACCAGCUcuuc -5'
26713 5' -54.8 NC_005808.1 + 5433 0.67 0.630839
Target:  5'- --gCGCGGaugGCGGCGUGGgCGAGGu- -3'
miRNA:   3'- uggGCGCUa--UGUCGCACCaGCUCUuc -5'
26713 5' -54.8 NC_005808.1 + 39662 0.67 0.586078
Target:  5'- uGCCgCGCGAcGCGGUGUGGgccggcaUGGGAAu -3'
miRNA:   3'- -UGG-GCGCUaUGUCGCACCa------GCUCUUc -5'
26713 5' -54.8 NC_005808.1 + 16164 0.68 0.574964
Target:  5'- cAUCCGCGAacUGCA-CGaGGUCGAGGGc -3'
miRNA:   3'- -UGGGCGCU--AUGUcGCaCCAGCUCUUc -5'
26713 5' -54.8 NC_005808.1 + 12202 0.69 0.509587
Target:  5'- gGCCCGCGcUGCcuGCcccUGGUCGGGAc- -3'
miRNA:   3'- -UGGGCGCuAUGu-CGc--ACCAGCUCUuc -5'
26713 5' -54.8 NC_005808.1 + 12063 1.08 0.001042
Target:  5'- gACCCGCGAUACAGCGUGGUCGAGAAGc -3'
miRNA:   3'- -UGGGCGCUAUGUCGCACCAGCUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.