miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 3' -59.8 NC_005808.1 + 31301 0.67 0.328868
Target:  5'- aGCCUGgcgacCGCgUGGUGGCCCGGCuGGAa -3'
miRNA:   3'- gCGGAU-----GUGgGUCGCCGGGCUG-CUUa -5'
26714 3' -59.8 NC_005808.1 + 32266 0.67 0.353382
Target:  5'- aCGCCgcagcgACGgCUA-CGGCCUGGCGAAa -3'
miRNA:   3'- -GCGGa-----UGUgGGUcGCCGGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 33189 0.67 0.345069
Target:  5'- aGaCCUGCaaGCCC-GCGGCCUGcGCGAc- -3'
miRNA:   3'- gC-GGAUG--UGGGuCGCCGGGC-UGCUua -5'
26714 3' -59.8 NC_005808.1 + 34034 0.69 0.267704
Target:  5'- gGCCUacgACGCCCAggaugaggucgagcGCGGCCUG-CGAu- -3'
miRNA:   3'- gCGGA---UGUGGGU--------------CGCCGGGCuGCUua -5'
26714 3' -59.8 NC_005808.1 + 38022 0.68 0.298173
Target:  5'- uCGCCUggcGCACCgAGCaGcGCCuCGGCGAc- -3'
miRNA:   3'- -GCGGA---UGUGGgUCG-C-CGG-GCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 38508 0.71 0.187237
Target:  5'- gCGCCgccCACCUGGcCGGCCUGAUGGc- -3'
miRNA:   3'- -GCGGau-GUGGGUC-GCCGGGCUGCUua -5'
26714 3' -59.8 NC_005808.1 + 38842 0.67 0.320981
Target:  5'- aGgCUACGUCCAGCGGCggcaCCGACGu-- -3'
miRNA:   3'- gCgGAUGUGGGUCGCCG----GGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 39785 0.71 0.197496
Target:  5'- cCGCgaGCACCU---GGCCCGACGAAUc -3'
miRNA:   3'- -GCGgaUGUGGGucgCCGGGCUGCUUA- -5'
26714 3' -59.8 NC_005808.1 + 40351 0.67 0.336898
Target:  5'- gCGUCgaACugCCGGCcaaGGCCCGGCGu-- -3'
miRNA:   3'- -GCGGa-UGugGGUCG---CCGGGCUGCuua -5'
26714 3' -59.8 NC_005808.1 + 40376 0.67 0.320981
Target:  5'- cCGCCUGCugCgC-GUGGugcuaCCCGACGAGg -3'
miRNA:   3'- -GCGGAUGugG-GuCGCC-----GGGCUGCUUa -5'
26714 3' -59.8 NC_005808.1 + 42400 0.69 0.269746
Target:  5'- uCGCCguguCGCCCGGCaGCgUGACGGu- -3'
miRNA:   3'- -GCGGau--GUGGGUCGcCGgGCUGCUua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.