miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26714 5' -56.2 NC_005808.1 + 11971 0.94 0.00593
Target:  5'- cUCAUU-GCGCCGGCUGGUCGCAAGAAc -3'
miRNA:   3'- -AGUAAgCGCGGCCGACCAGCGUUCUU- -5'
26714 5' -56.2 NC_005808.1 + 34117 0.71 0.2757
Target:  5'- uUCAUuacUCGCGUCGGCUGcGgcaUCGCAGGc- -3'
miRNA:   3'- -AGUA---AGCGCGGCCGAC-C---AGCGUUCuu -5'
26714 5' -56.2 NC_005808.1 + 15366 0.67 0.490418
Target:  5'- -----gGCGCCGGCUGGacaGCAaAGGAu -3'
miRNA:   3'- aguaagCGCGGCCGACCag-CGU-UCUU- -5'
26714 5' -56.2 NC_005808.1 + 11590 0.66 0.533409
Target:  5'- cCAgggC-CGCCGGCUGGcCGCcGGGc -3'
miRNA:   3'- aGUaa-GcGCGGCCGACCaGCGuUCUu -5'
26714 5' -56.2 NC_005808.1 + 38764 0.66 0.577667
Target:  5'- gCAaagUGCGCUGGaUUGGUCGCAAc-- -3'
miRNA:   3'- aGUaa-GCGCGGCC-GACCAGCGUUcuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.