miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26716 5' -58.6 NC_005808.1 + 18434 0.66 0.459822
Target:  5'- cGCCgaagCGCGcAGCCgucGAGGCGCUGg- -3'
miRNA:   3'- -CGGaaggGCGC-UUGG---CUCCGCGACaa -5'
26716 5' -58.6 NC_005808.1 + 5317 0.66 0.449898
Target:  5'- gGCCguaggCCGCGAGCaCGuGGCGCa--- -3'
miRNA:   3'- -CGGaag--GGCGCUUG-GCuCCGCGacaa -5'
26716 5' -58.6 NC_005808.1 + 13215 0.66 0.440093
Target:  5'- gGCCUaCCgCGcCGAGuCCGAGG-GCUGg- -3'
miRNA:   3'- -CGGAaGG-GC-GCUU-GGCUCCgCGACaa -5'
26716 5' -58.6 NC_005808.1 + 32014 0.67 0.411427
Target:  5'- gGCUgcgcgCCUGgGuacuacgcCCGAGGCGCUGUUc -3'
miRNA:   3'- -CGGaa---GGGCgCuu------GGCUCCGCGACAA- -5'
26716 5' -58.6 NC_005808.1 + 18886 0.67 0.411427
Target:  5'- gGCaCUggCCCGCG-ACCuGGGCGCUa-- -3'
miRNA:   3'- -CG-GAa-GGGCGCuUGGcUCCGCGAcaa -5'
26716 5' -58.6 NC_005808.1 + 32285 0.67 0.402132
Target:  5'- gGCCUggcgaaaCUgGCGAAguggcaccCCGAGGUGCUGg- -3'
miRNA:   3'- -CGGAa------GGgCGCUU--------GGCUCCGCGACaa -5'
26716 5' -58.6 NC_005808.1 + 33611 0.68 0.357713
Target:  5'- cGCC--CCCGCGcggcgaggaAAUCGAGGCGCUu-- -3'
miRNA:   3'- -CGGaaGGGCGC---------UUGGCUCCGCGAcaa -5'
26716 5' -58.6 NC_005808.1 + 15161 0.68 0.324733
Target:  5'- cGCCagggCCUGCGGccGCCG-GGCGCgGUg -3'
miRNA:   3'- -CGGaa--GGGCGCU--UGGCuCCGCGaCAa -5'
26716 5' -58.6 NC_005808.1 + 39123 0.71 0.227376
Target:  5'- gGCCgucgaacucgCCCGCGAACauCGGGGCGCg--- -3'
miRNA:   3'- -CGGaa--------GGGCGCUUG--GCUCCGCGacaa -5'
26716 5' -58.6 NC_005808.1 + 6353 0.77 0.086296
Target:  5'- cGCCcggCCCGaaGGCCGGGGCGCUGg- -3'
miRNA:   3'- -CGGaa-GGGCgcUUGGCUCCGCGACaa -5'
26716 5' -58.6 NC_005808.1 + 11047 1.07 0.000459
Target:  5'- cGCCUUCCCGCGAACCGAGGCGCUGUUu -3'
miRNA:   3'- -CGGAAGGGCGCUUGGCUCCGCGACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.