miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26717 3' -60.6 NC_005808.1 + 9514 1.08 0.000243
Target:  5'- gGAUGUAGGCCGCCGCGUCGCUGCGCGa -3'
miRNA:   3'- -CUACAUCCGGCGGCGCAGCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 29573 0.81 0.03206
Target:  5'- cGAUGacgAGGCCGUCGCcacugCGCUGCGCGg -3'
miRNA:   3'- -CUACa--UCCGGCGGCGca---GCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 4348 0.75 0.087472
Target:  5'- uGAUGcuGGCCGuuGCGUUGCcggUGCGCGu -3'
miRNA:   3'- -CUACauCCGGCggCGCAGCG---ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 16067 0.75 0.089971
Target:  5'- --cGU-GGCCGCCGCG-CGCgGCGCc -3'
miRNA:   3'- cuaCAuCCGGCGGCGCaGCGaCGCGc -5'
26717 3' -60.6 NC_005808.1 + 8140 0.74 0.094905
Target:  5'- -uUGUGGGCgugcgggugucggCGCUGCGUCcCUGCGCGu -3'
miRNA:   3'- cuACAUCCG-------------GCGGCGCAGcGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 891 0.72 0.143792
Target:  5'- ----aGGGCCGCCGCGUUGUUccagaaguugaccGCGCu -3'
miRNA:   3'- cuacaUCCGGCGGCGCAGCGA-------------CGCGc -5'
26717 3' -60.6 NC_005808.1 + 11153 0.71 0.169611
Target:  5'- -cUGcUGGGCCGCCuGCGcaCGUUGCGUGc -3'
miRNA:   3'- cuAC-AUCCGGCGG-CGCa-GCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 37720 0.7 0.183775
Target:  5'- ----gAGGCCGCCGuCGccgCGCUGgGCa -3'
miRNA:   3'- cuacaUCCGGCGGC-GCa--GCGACgCGc -5'
26717 3' -60.6 NC_005808.1 + 27837 0.7 0.20428
Target:  5'- cGcgGUGGcGCCgGCCGCGcCGCUGCuCa -3'
miRNA:   3'- -CuaCAUC-CGG-CGGCGCaGCGACGcGc -5'
26717 3' -60.6 NC_005808.1 + 10332 0.69 0.215258
Target:  5'- ----cAGGCCGuaGcCGUCGCUGCgGCGu -3'
miRNA:   3'- cuacaUCCGGCggC-GCAGCGACG-CGC- -5'
26717 3' -60.6 NC_005808.1 + 18077 0.69 0.238733
Target:  5'- cGUGcUGGGCCGCCGaa--GCcgGCGCGa -3'
miRNA:   3'- cUAC-AUCCGGCGGCgcagCGa-CGCGC- -5'
26717 3' -60.6 NC_005808.1 + 2102 0.69 0.244927
Target:  5'- --gGU-GGUCGCCGUGUCGUcgguauagauUGCGCc -3'
miRNA:   3'- cuaCAuCCGGCGGCGCAGCG----------ACGCGc -5'
26717 3' -60.6 NC_005808.1 + 3880 0.68 0.28492
Target:  5'- -cUGUAGGCCGCgcUGcCGUCGCcGC-CGa -3'
miRNA:   3'- cuACAUCCGGCG--GC-GCAGCGaCGcGC- -5'
26717 3' -60.6 NC_005808.1 + 21146 0.68 0.287762
Target:  5'- -----uGGCCGCCGUGUCcGCgcccugguucaacaGCGCGg -3'
miRNA:   3'- cuacauCCGGCGGCGCAG-CGa-------------CGCGC- -5'
26717 3' -60.6 NC_005808.1 + 447 0.67 0.315108
Target:  5'- ---uUGGGCUGCUGCGcggccagcuugcgggCGCUGuCGCGg -3'
miRNA:   3'- cuacAUCCGGCGGCGCa--------------GCGAC-GCGC- -5'
26717 3' -60.6 NC_005808.1 + 15110 0.67 0.32205
Target:  5'- ----gAGGCCGCCggcauccucGCGUgGUgcgUGCGCGg -3'
miRNA:   3'- cuacaUCCGGCGG---------CGCAgCG---ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 26205 0.67 0.32205
Target:  5'- cGGUGUAGGUCGagGCGUUuuucaUGCGCGc -3'
miRNA:   3'- -CUACAUCCGGCggCGCAGcg---ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 8670 0.67 0.329896
Target:  5'- uGUGUGcagcGGCUGCUGCGcCGCccaggUGUGCGc -3'
miRNA:   3'- cUACAU----CCGGCGGCGCaGCG-----ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 15173 0.67 0.329896
Target:  5'- -----cGGCCGCCGgG-CGCgGUGCGc -3'
miRNA:   3'- cuacauCCGGCGGCgCaGCGaCGCGC- -5'
26717 3' -60.6 NC_005808.1 + 14398 0.66 0.337883
Target:  5'- --cGUAGGCguagcgaaGCUggGCGUCGCcagGCGCGc -3'
miRNA:   3'- cuaCAUCCGg-------CGG--CGCAGCGa--CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.