miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26717 3' -60.6 NC_005808.1 + 19493 0.66 0.379896
Target:  5'- cGGUGggcAGGCCGCUGCGaacCGUggucuUGUGCu -3'
miRNA:   3'- -CUACa--UCCGGCGGCGCa--GCG-----ACGCGc -5'
26717 3' -60.6 NC_005808.1 + 21146 0.68 0.287762
Target:  5'- -----uGGCCGCCGUGUCcGCgcccugguucaacaGCGCGg -3'
miRNA:   3'- cuacauCCGGCGGCGCAG-CGa-------------CGCGC- -5'
26717 3' -60.6 NC_005808.1 + 23030 0.66 0.346009
Target:  5'- -cUGuUGGGCUuguuGCUGCG-CGCUGCGUu -3'
miRNA:   3'- cuAC-AUCCGG----CGGCGCaGCGACGCGc -5'
26717 3' -60.6 NC_005808.1 + 26205 0.67 0.32205
Target:  5'- cGGUGUAGGUCGagGCGUUuuucaUGCGCGc -3'
miRNA:   3'- -CUACAUCCGGCggCGCAGcg---ACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 27837 0.7 0.20428
Target:  5'- cGcgGUGGcGCCgGCCGCGcCGCUGCuCa -3'
miRNA:   3'- -CuaCAUC-CGG-CGGCGCaGCGACGcGc -5'
26717 3' -60.6 NC_005808.1 + 28085 0.66 0.371219
Target:  5'- --gGU-GGCCGCgGCGUCGUauuccGuCGCGg -3'
miRNA:   3'- cuaCAuCCGGCGgCGCAGCGa----C-GCGC- -5'
26717 3' -60.6 NC_005808.1 + 28557 0.66 0.388708
Target:  5'- -----cGGCCGCCGgccaUCGCgGCGCGc -3'
miRNA:   3'- cuacauCCGGCGGCgc--AGCGaCGCGC- -5'
26717 3' -60.6 NC_005808.1 + 29573 0.81 0.03206
Target:  5'- cGAUGacgAGGCCGUCGCcacugCGCUGCGCGg -3'
miRNA:   3'- -CUACa--UCCGGCGGCGca---GCGACGCGC- -5'
26717 3' -60.6 NC_005808.1 + 35512 0.66 0.346009
Target:  5'- --cGUGGGCgCGCCGUGgguaggcCGCgGCGUc -3'
miRNA:   3'- cuaCAUCCG-GCGGCGCa------GCGaCGCGc -5'
26717 3' -60.6 NC_005808.1 + 37720 0.7 0.183775
Target:  5'- ----gAGGCCGCCGuCGccgCGCUGgGCa -3'
miRNA:   3'- cuacaUCCGGCGGC-GCa--GCGACgCGc -5'
26717 3' -60.6 NC_005808.1 + 39761 0.66 0.379896
Target:  5'- uGGUGcUGGcGCCGCUGCG-CGUgGcCGCGa -3'
miRNA:   3'- -CUAC-AUC-CGGCGGCGCaGCGaC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.