Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 10219 | 0.7 | 0.147977 |
Target: 5'- uGGCUUCCu--GCUggGCgGCCGGGGc -3' miRNA: 3'- gCCGAAGGuccCGGugCGaCGGCCCC- -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 36251 | 0.7 | 0.147977 |
Target: 5'- cCGGCcUUC-GGGCCggGCGCUuugGCUGGGGc -3' miRNA: 3'- -GCCGaAGGuCCCGG--UGCGA---CGGCCCC- -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 14890 | 0.71 | 0.126402 |
Target: 5'- cCGGCUUUCAGGGUCuGCGCggcgaucugcugcugGCCGGc- -3' miRNA: 3'- -GCCGAAGGUCCCGG-UGCGa--------------CGGCCcc -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 8305 | 0.71 | 0.126063 |
Target: 5'- aGuGCagCCAGcGGUgCGCGCUGCuCGGGGa -3' miRNA: 3'- gC-CGaaGGUC-CCG-GUGCGACG-GCCCC- -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 29016 | 0.71 | 0.126063 |
Target: 5'- aGGCgaCCAGGcGCCGCGCUucgGCCaGGu -3' miRNA: 3'- gCCGaaGGUCC-CGGUGCGA---CGGcCCc -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 180 | 0.71 | 0.110138 |
Target: 5'- cCGGUgucgCUGGGcaccGUCACGCUGCCGGGc -3' miRNA: 3'- -GCCGaa--GGUCC----CGGUGCGACGGCCCc -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 10930 | 0.77 | 0.044141 |
Target: 5'- cCGGUUUgCAGGGCCucgggcaguuGCGCggcgacaGCCGGGGa -3' miRNA: 3'- -GCCGAAgGUCCCGG----------UGCGa------CGGCCCC- -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 11358 | 0.78 | 0.037274 |
Target: 5'- cCGGCUcguagCU-GGGCCGCGC-GCCGGGGu -3' miRNA: 3'- -GCCGAa----GGuCCCGGUGCGaCGGCCCC- -5' |
|||||||
26719 | 5' | -63.5 | NC_005808.1 | + | 8277 | 1.08 | 0.000139 |
Target: 5'- uCGGCUUCCAGGGCCACGCUGCCGGGGc -3' miRNA: 3'- -GCCGAAGGUCCCGGUGCGACGGCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home