miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 36214 0.66 0.430514
Target:  5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3'
miRNA:   3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5'
26720 3' -60 NC_005808.1 + 9275 0.66 0.427687
Target:  5'- cGGUCGGcCCGGUAcacCGGCUgcgcauugacuuccUCGGCg -3'
miRNA:   3'- -CCGGCC-GGUCGUcaaGCCGA--------------AGCCGg -5'
26720 3' -60 NC_005808.1 + 6506 0.66 0.421133
Target:  5'- uGGuuGGCgAGCAGUuucUUGGCgaguuuUUCGGg- -3'
miRNA:   3'- -CCggCCGgUCGUCA---AGCCG------AAGCCgg -5'
26720 3' -60 NC_005808.1 + 8413 0.66 0.421133
Target:  5'- cGGCCagGGCCGuGCGcuugUCuacggccuugaGGCUUUGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUca--AG-----------CCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 13745 0.66 0.421133
Target:  5'- uGGCgCGGCgCugGGaCAGcUUCGGCaagucCGGCCg -3'
miRNA:   3'- -CCG-GCCG-G--UC-GUC-AAGCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 32824 0.66 0.411876
Target:  5'- cGGUCGGacuacaCCAGCcGcaaCGGCUUCgccuGGCCg -3'
miRNA:   3'- -CCGGCC------GGUCGuCaa-GCCGAAG----CCGG- -5'
26720 3' -60 NC_005808.1 + 16337 0.66 0.411876
Target:  5'- aGCCgaccaGGCCGGCGGgugccCGuGCcUUCGGCg -3'
miRNA:   3'- cCGG-----CCGGUCGUCaa---GC-CG-AAGCCGg -5'
26720 3' -60 NC_005808.1 + 15324 0.66 0.411876
Target:  5'- cGCgCGGCgAacuGCGGUUCauuGCcUCGGCCa -3'
miRNA:   3'- cCG-GCCGgU---CGUCAAGc--CGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 6802 0.66 0.405472
Target:  5'- cGCCuGGUCAGCcagggacacggcgcgGGUuucgucguugcccUCGGCgaCGGCCu -3'
miRNA:   3'- cCGG-CCGGUCG---------------UCA-------------AGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33647 0.66 0.402746
Target:  5'- cGGCaCGGCCAccGCuGgcgaaucCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 4261 0.66 0.402746
Target:  5'- uGCCGGCCGuCAGcgcCGGCauggugaUGGCCg -3'
miRNA:   3'- cCGGCCGGUcGUCaa-GCCGaa-----GCCGG- -5'
26720 3' -60 NC_005808.1 + 32260 0.66 0.402746
Target:  5'- aGGCacacGCC-GCAGcgaCGGCUaCGGCCu -3'
miRNA:   3'- -CCGgc--CGGuCGUCaa-GCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 18125 0.66 0.402746
Target:  5'- uGGCgcaGGCCaagcAGCAGgucgUCGGCgUCaaugucgccgaGGCCg -3'
miRNA:   3'- -CCGg--CCGG----UCGUCa---AGCCGaAG-----------CCGG- -5'
26720 3' -60 NC_005808.1 + 30143 0.66 0.393746
Target:  5'- cGCCGGCCuGCAccgcgUCGGacaucagCGGCa -3'
miRNA:   3'- cCGGCCGGuCGUca---AGCCgaa----GCCGg -5'
26720 3' -60 NC_005808.1 + 13856 0.66 0.393746
Target:  5'- cGCCuGCCGGaa----GGUUUCGGCCu -3'
miRNA:   3'- cCGGcCGGUCgucaagCCGAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 19369 0.66 0.393746
Target:  5'- aGGCgCGGUCGGUGGccgaGGCcgaGGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaag-CCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 29417 0.66 0.393746
Target:  5'- cGCCGGCCAagggcgccCAGcgCGGCcgacacUGGCCg -3'
miRNA:   3'- cCGGCCGGUc-------GUCaaGCCGaa----GCCGG- -5'
26720 3' -60 NC_005808.1 + 27350 0.66 0.393746
Target:  5'- aGGCCgGGCCGaccucGCAGcacUCGuccaGCcaUUCGGCCa -3'
miRNA:   3'- -CCGG-CCGGU-----CGUCa--AGC----CG--AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 14977 0.66 0.384876
Target:  5'- cGCCGGUCGcCAGaaUGGCgUCGGCa -3'
miRNA:   3'- cCGGCCGGUcGUCaaGCCGaAGCCGg -5'
26720 3' -60 NC_005808.1 + 36252 0.67 0.376141
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.