miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 40733 0.68 0.314228
Target:  5'- cGCCGGCCAcgggcugaaccuGCAagacggCGGCaacauccuggcuuucUUCGGCCa -3'
miRNA:   3'- cCGGCCGGU------------CGUcaa---GCCG---------------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 10770 0.68 0.318824
Target:  5'- -uUCGGCCcGCAGUUC---UUCGGCCu -3'
miRNA:   3'- ccGGCCGGuCGUCAAGccgAAGCCGG- -5'
26720 3' -60 NC_005808.1 + 29263 0.68 0.318824
Target:  5'- aGGCCGGCCGGUgucGGggUGGacgUGGUa -3'
miRNA:   3'- -CCGGCCGGUCG---UCaaGCCgaaGCCGg -5'
26720 3' -60 NC_005808.1 + 38007 0.68 0.318824
Target:  5'- aGGCCGagcaguuccucGCCuggcgcaccgAGCAGcgccUCGGCgacuUCGGCCu -3'
miRNA:   3'- -CCGGC-----------CGG----------UCGUCa---AGCCGa---AGCCGG- -5'
26720 3' -60 NC_005808.1 + 17089 0.68 0.318824
Target:  5'- aGCCGGC--GCGGUucUCGGCcg-GGCCu -3'
miRNA:   3'- cCGGCCGguCGUCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 29738 0.68 0.318824
Target:  5'- -aUCGGCCAcGCcGUagaacUCGGCcUCGGCUg -3'
miRNA:   3'- ccGGCCGGU-CGuCA-----AGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 19099 0.68 0.326595
Target:  5'- aGGCCGGCCuGCgaacccuucgGGUagaUGGUaugcagggugUUCGGCCc -3'
miRNA:   3'- -CCGGCCGGuCG----------UCAa--GCCG----------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 11839 0.68 0.326595
Target:  5'- cGGCCGcGCC-GCGGUU-GGCcUgGGCg -3'
miRNA:   3'- -CCGGC-CGGuCGUCAAgCCGaAgCCGg -5'
26720 3' -60 NC_005808.1 + 11294 0.68 0.289133
Target:  5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3'
miRNA:   3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5'
26720 3' -60 NC_005808.1 + 31013 0.68 0.296347
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 7706 0.68 0.309682
Target:  5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3'
miRNA:   3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 10900 0.68 0.311192
Target:  5'- gGGCUGGUcaggcggugcugCAGCAGUUacUGGUgcuugUGGCCg -3'
miRNA:   3'- -CCGGCCG------------GUCGUCAA--GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 10074 0.68 0.311949
Target:  5'- uGGCCGGCaucacCAGCcugcacgggcgcggAGUUCucggccuuggauucgGGCgcaUCGGCCg -3'
miRNA:   3'- -CCGGCCG-----GUCG--------------UCAAG---------------CCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 27691 0.68 0.318824
Target:  5'- aGGCCGGCCAGCAGcagaUC-GCcgCGcagacccugaaaGCCg -3'
miRNA:   3'- -CCGGCCGGUCGUCa---AGcCGaaGC------------CGG- -5'
26720 3' -60 NC_005808.1 + 13305 0.68 0.318824
Target:  5'- gGGCaagGGCCAGCAGUUCG---UC-GCCu -3'
miRNA:   3'- -CCGg--CCGGUCGUCAAGCcgaAGcCGG- -5'
26720 3' -60 NC_005808.1 + 13350 0.68 0.318824
Target:  5'- cGGCCGGCCuuaugAGUGGa-CGGacuuCUUCGGCg -3'
miRNA:   3'- -CCGGCCGG-----UCGUCaaGCC----GAAGCCGg -5'
26720 3' -60 NC_005808.1 + 17248 0.68 0.326595
Target:  5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3'
miRNA:   3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 32937 0.68 0.326595
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCgcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 8236 0.69 0.255128
Target:  5'- cGGCC-GUCAGCAGcUUGcGCUUcaagCGGCCc -3'
miRNA:   3'- -CCGGcCGGUCGUCaAGC-CGAA----GCCGG- -5'
26720 3' -60 NC_005808.1 + 8802 0.69 0.255128
Target:  5'- cGGCCGcGCCGGuCAGUaccgaUCuGCUgggUCgGGCCa -3'
miRNA:   3'- -CCGGC-CGGUC-GUCA-----AGcCGA---AG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.