miRNA display CGI


Results 61 - 80 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 33197 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33245 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33293 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33341 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33389 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33437 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33485 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 33557 0.68 0.311192
Target:  5'- cGGCaCGGCCAccGCuGgcuaucgCGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 10900 0.68 0.311192
Target:  5'- gGGCUGGUcaggcggugcugCAGCAGUUacUGGUgcuugUGGCCg -3'
miRNA:   3'- -CCGGCCG------------GUCGUCAA--GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 7706 0.68 0.309682
Target:  5'- cGGCCGGCUugccgaugaacuGCAGcgcacgcUCGGCggcCGGCUu -3'
miRNA:   3'- -CCGGCCGGu-----------CGUCa------AGCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 13126 0.68 0.307428
Target:  5'- uGCCGGCCAggcgugggucguucuGCAacugcgccucgaugUCGGCcagugUCGGCCg -3'
miRNA:   3'- cCGGCCGGU---------------CGUca------------AGCCGa----AGCCGG- -5'
26720 3' -60 NC_005808.1 + 12287 0.68 0.303699
Target:  5'- uGCUGGcCCAGCGugcCGGCUaCGGCg -3'
miRNA:   3'- cCGGCC-GGUCGUcaaGCCGAaGCCGg -5'
26720 3' -60 NC_005808.1 + 514 0.68 0.296347
Target:  5'- cGG-CGGCUuGCAGg-CGGUucugUUCGGCCg -3'
miRNA:   3'- -CCgGCCGGuCGUCaaGCCG----AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 18281 0.68 0.296347
Target:  5'- uGCCGGCCgucAGCGGgccggUGGCgaCGGUg -3'
miRNA:   3'- cCGGCCGG---UCGUCaa---GCCGaaGCCGg -5'
26720 3' -60 NC_005808.1 + 31013 0.68 0.296347
Target:  5'- cGGCCaGCCGGCGGcccugggCGGCa-UGGCUu -3'
miRNA:   3'- -CCGGcCGGUCGUCaa-----GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 16652 0.68 0.289133
Target:  5'- uGCCGGCCgacgagggAGCGGacUCGGUUuuacccUCGGCa -3'
miRNA:   3'- cCGGCCGG--------UCGUCa-AGCCGA------AGCCGg -5'
26720 3' -60 NC_005808.1 + 11294 0.68 0.289133
Target:  5'- aGCCgGGCCAccacGCGGUcgccaGGCUUCGcuGCCa -3'
miRNA:   3'- cCGG-CCGGU----CGUCAag---CCGAAGC--CGG- -5'
26720 3' -60 NC_005808.1 + 5715 0.68 0.288419
Target:  5'- cGCCagaaaugggGGCCuGCacGGUUCGGCUaaguuugUCGGCg -3'
miRNA:   3'- cCGG---------CCGGuCG--UCAAGCCGA-------AGCCGg -5'
26720 3' -60 NC_005808.1 + 19841 0.69 0.282057
Target:  5'- aGGCCGGUuuuguuCAGCAGcgUGGUgagUUCGGgCg -3'
miRNA:   3'- -CCGGCCG------GUCGUCaaGCCG---AAGCCgG- -5'
26720 3' -60 NC_005808.1 + 1462 0.69 0.282057
Target:  5'- cGGCgCGGUCGGCGGccuccUGGCa--GGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa---GCCGaagCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.