miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 14267 0.69 0.261656
Target:  5'- uGGuuGGCCugcuGCAccaugcugUCGGCgaugCGGCCc -3'
miRNA:   3'- -CCggCCGGu---CGUca------AGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 14588 0.71 0.209805
Target:  5'- uGCCGGCggccgauccgcuuuuCAGCAGUgcgUCGGCUUccaugcuucCGGCg -3'
miRNA:   3'- cCGGCCG---------------GUCGUCA---AGCCGAA---------GCCGg -5'
26720 3' -60 NC_005808.1 + 14770 0.67 0.342557
Target:  5'- cGGCCGGCgccaccgcgggCAGCGcgcgcgaggacGUgcugCGGCUgcgCGGCg -3'
miRNA:   3'- -CCGGCCG-----------GUCGU-----------CAa---GCCGAa--GCCGg -5'
26720 3' -60 NC_005808.1 + 14977 0.66 0.384876
Target:  5'- cGCCGGUCGcCAGaaUGGCgUCGGCa -3'
miRNA:   3'- cCGGCCGGUcGUCaaGCCGaAGCCGg -5'
26720 3' -60 NC_005808.1 + 15324 0.66 0.411876
Target:  5'- cGCgCGGCgAacuGCGGUUCauuGCcUCGGCCa -3'
miRNA:   3'- cCG-GCCGgU---CGUCAAGc--CGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 15629 0.67 0.367539
Target:  5'- cGUCGGUCGGC--UUCGGUgUUGGCUu -3'
miRNA:   3'- cCGGCCGGUCGucAAGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 16037 0.71 0.186864
Target:  5'- uGGCCuGCCAGUuguaggccAGUUCGcGCacgUGGCCg -3'
miRNA:   3'- -CCGGcCGGUCG--------UCAAGC-CGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 16337 0.66 0.411876
Target:  5'- aGCCgaccaGGCCGGCGGgugccCGuGCcUUCGGCg -3'
miRNA:   3'- cCGG-----CCGGUCGUCaa---GC-CG-AAGCCGg -5'
26720 3' -60 NC_005808.1 + 16652 0.68 0.289133
Target:  5'- uGCCGGCCgacgagggAGCGGacUCGGUUuuacccUCGGCa -3'
miRNA:   3'- cCGGCCGG--------UCGUCa-AGCCGA------AGCCGg -5'
26720 3' -60 NC_005808.1 + 17089 0.68 0.318824
Target:  5'- aGCCGGC--GCGGUucUCGGCcg-GGCCu -3'
miRNA:   3'- cCGGCCGguCGUCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 17248 0.68 0.326595
Target:  5'- uGGCCGGCUAuGCGaacUGGC--CGGCCu -3'
miRNA:   3'- -CCGGCCGGU-CGUcaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 17862 0.69 0.261656
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 18125 0.66 0.402746
Target:  5'- uGGCgcaGGCCaagcAGCAGgucgUCGGCgUCaaugucgccgaGGCCg -3'
miRNA:   3'- -CCGg--CCGG----UCGUCa---AGCCGaAG-----------CCGG- -5'
26720 3' -60 NC_005808.1 + 18281 0.68 0.296347
Target:  5'- uGCCGGCCgucAGCGGgccggUGGCgaCGGUg -3'
miRNA:   3'- cCGGCCGG---UCGUCaa---GCCGaaGCCGg -5'
26720 3' -60 NC_005808.1 + 18461 0.67 0.342557
Target:  5'- cGGUCGcggcGCCGGCGGcgUCGGCcgaUUCGuCCa -3'
miRNA:   3'- -CCGGC----CGGUCGUCa-AGCCG---AAGCcGG- -5'
26720 3' -60 NC_005808.1 + 18572 0.7 0.224474
Target:  5'- aGGCCGcGCUcGCGGUgaCGGCc-UGGCCg -3'
miRNA:   3'- -CCGGC-CGGuCGUCAa-GCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 18699 0.67 0.334507
Target:  5'- gGGCCucGGUCAGCAGcagcgcaUCGGUacggCGGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCa------AGCCGaa--GCCGg -5'
26720 3' -60 NC_005808.1 + 19099 0.68 0.326595
Target:  5'- aGGCCGGCCuGCgaacccuucgGGUagaUGGUaugcagggugUUCGGCCc -3'
miRNA:   3'- -CCGGCCGGuCG----------UCAa--GCCG----------AAGCCGG- -5'
26720 3' -60 NC_005808.1 + 19369 0.66 0.393746
Target:  5'- aGGCgCGGUCGGUGGccgaGGCcgaGGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaag-CCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 19768 0.73 0.15078
Target:  5'- uGUCGGCUgucGGCAGcgCGGCgaagUCgGGCCa -3'
miRNA:   3'- cCGGCCGG---UCGUCaaGCCGa---AG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.