miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 13682 0.69 0.282057
Target:  5'- aGGCCcuGGCUuugugggacgAGUGG-UCGGCgaCGGCCa -3'
miRNA:   3'- -CCGG--CCGG----------UCGUCaAGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 4363 0.69 0.277187
Target:  5'- cGGCCGGaCGGCAGgcggaugcgcagccaGGCgccgUCGcGCCg -3'
miRNA:   3'- -CCGGCCgGUCGUCaag------------CCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 24311 0.69 0.27512
Target:  5'- aGGUCGGCgAGCAGccgCGGgUcaggCGGCa -3'
miRNA:   3'- -CCGGCCGgUCGUCaa-GCCgAa---GCCGg -5'
26720 3' -60 NC_005808.1 + 13014 0.69 0.27512
Target:  5'- aGGCCGcGCagcGCAGU--GGCgaCGGCCu -3'
miRNA:   3'- -CCGGC-CGgu-CGUCAagCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 34487 0.69 0.26832
Target:  5'- cGCCGGCCGcGCGGUgcagGGCcucaaacgcuuUUgGGCCu -3'
miRNA:   3'- cCGGCCGGU-CGUCAag--CCG-----------AAgCCGG- -5'
26720 3' -60 NC_005808.1 + 28177 0.69 0.266976
Target:  5'- cGCCGuugcccacGcCCAGCAGgugCGGCgccuuguccaggUCGGCCa -3'
miRNA:   3'- cCGGC--------C-GGUCGUCaa-GCCGa-----------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 2588 0.69 0.261656
Target:  5'- aGCUugcaaGGCCAGCAGgUUGGCga-GGUCg -3'
miRNA:   3'- cCGG-----CCGGUCGUCaAGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 11088 0.69 0.261656
Target:  5'- gGGUCGcgcGCgAGCAccuugUCGGCUgCGGCCa -3'
miRNA:   3'- -CCGGC---CGgUCGUca---AGCCGAaGCCGG- -5'
26720 3' -60 NC_005808.1 + 24575 0.69 0.261656
Target:  5'- aGGCCGGCCA-CGGUcgGGCcgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUcGUCAagCCGaa--GCCGg -5'
26720 3' -60 NC_005808.1 + 14267 0.69 0.261656
Target:  5'- uGGuuGGCCugcuGCAccaugcugUCGGCgaugCGGCCc -3'
miRNA:   3'- -CCggCCGGu---CGUca------AGCCGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 33605 0.69 0.261656
Target:  5'- cGGCaCGGCCAccGCugg-CGGCa-CGGCCa -3'
miRNA:   3'- -CCG-GCCGGU--CGucaaGCCGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 39050 0.69 0.261656
Target:  5'- cGGCgCGGUUGGCGGgacugcgCGGUgugCGGCUg -3'
miRNA:   3'- -CCG-GCCGGUCGUCaa-----GCCGaa-GCCGG- -5'
26720 3' -60 NC_005808.1 + 17862 0.69 0.261656
Target:  5'- gGGUCgaGGCCGcGCAGgcgCGGUggaagCGGCCc -3'
miRNA:   3'- -CCGG--CCGGU-CGUCaa-GCCGaa---GCCGG- -5'
26720 3' -60 NC_005808.1 + 4205 0.69 0.261656
Target:  5'- uGGCC-GCgAGCAcGUcgCGGCUUgCGGCUu -3'
miRNA:   3'- -CCGGcCGgUCGU-CAa-GCCGAA-GCCGG- -5'
26720 3' -60 NC_005808.1 + 8989 0.69 0.260997
Target:  5'- uGGCCGugccGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 8236 0.69 0.255128
Target:  5'- cGGCC-GUCAGCAGcUUGcGCUUcaagCGGCCc -3'
miRNA:   3'- -CCGGcCGGUCGUCaAGC-CGAA----GCCGG- -5'
26720 3' -60 NC_005808.1 + 8802 0.69 0.255128
Target:  5'- cGGCCGcGCCGGuCAGUaccgaUCuGCUgggUCgGGCCa -3'
miRNA:   3'- -CCGGC-CGGUC-GUCA-----AGcCGA---AG-CCGG- -5'
26720 3' -60 NC_005808.1 + 12586 0.69 0.255128
Target:  5'- gGGCgCGGCCGuGCAGUUgGaGCacgaUGGCCc -3'
miRNA:   3'- -CCG-GCCGGU-CGUCAAgC-CGaa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 23514 0.69 0.255128
Target:  5'- aGGCCGGCCuGCAa-UCGcGUgaccUCGGCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaAGC-CGa---AGCCGg -5'
26720 3' -60 NC_005808.1 + 6181 0.7 0.244961
Target:  5'- aGGCCGGUCuugccgcagcguuuGCAGgugaCGGCgcgCGGCUc -3'
miRNA:   3'- -CCGGCCGGu-------------CGUCaa--GCCGaa-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.