miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26720 3' -60 NC_005808.1 + 19841 0.69 0.282057
Target:  5'- aGGCCGGUuuuguuCAGCAGcgUGGUgagUUCGGgCg -3'
miRNA:   3'- -CCGGCCG------GUCGUCaaGCCG---AAGCCgG- -5'
26720 3' -60 NC_005808.1 + 20225 0.7 0.222738
Target:  5'- cGGCCGGCUguuGGCcuugGGUgccuugcuccugggUCGGCUguugcugcugUUGGCCg -3'
miRNA:   3'- -CCGGCCGG---UCG----UCA--------------AGCCGA----------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 20285 0.72 0.177186
Target:  5'- cGGCaCGGCCAGCAGcaUCGuGCUgcccgacuUCGacGCCg -3'
miRNA:   3'- -CCG-GCCGGUCGUCa-AGC-CGA--------AGC--CGG- -5'
26720 3' -60 NC_005808.1 + 20331 0.71 0.197005
Target:  5'- gGGCUGGCCuuCAGUggucguugCGGCUUCcGUCa -3'
miRNA:   3'- -CCGGCCGGucGUCAa-------GCCGAAGcCGG- -5'
26720 3' -60 NC_005808.1 + 20615 0.7 0.236343
Target:  5'- aGGCgGcGUC-GCAGgUCGGUgUCGGCCu -3'
miRNA:   3'- -CCGgC-CGGuCGUCaAGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 21017 0.67 0.376141
Target:  5'- uGCCGGCUuccuucggGGUcaucuucauguuGGUgagCGGCaugUCGGCCu -3'
miRNA:   3'- cCGGCCGG--------UCG------------UCAa--GCCGa--AGCCGG- -5'
26720 3' -60 NC_005808.1 + 21259 0.7 0.213115
Target:  5'- gGGUCGaugcCCAGCAugUCGGCguaagugUCGGCCc -3'
miRNA:   3'- -CCGGCc---GGUCGUcaAGCCGa------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 21692 0.67 0.364986
Target:  5'- aGGCUGggcaucgacacguuGCCGGCAG-UCGGUUccgUGGUCg -3'
miRNA:   3'- -CCGGC--------------CGGUCGUCaAGCCGAa--GCCGG- -5'
26720 3' -60 NC_005808.1 + 22798 0.71 0.207623
Target:  5'- gGGCCGGUCAGCauGGUgcCGGac-UGGCCc -3'
miRNA:   3'- -CCGGCCGGUCG--UCAa-GCCgaaGCCGG- -5'
26720 3' -60 NC_005808.1 + 22983 0.74 0.117842
Target:  5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3'
miRNA:   3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5'
26720 3' -60 NC_005808.1 + 23202 0.77 0.071138
Target:  5'- aGGUCGGCCucguCGGUgaauUCGGCcUCGGCCu -3'
miRNA:   3'- -CCGGCCGGuc--GUCA----AGCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 23514 0.69 0.255128
Target:  5'- aGGCCGGCCuGCAa-UCGcGUgaccUCGGCg -3'
miRNA:   3'- -CCGGCCGGuCGUcaAGC-CGa---AGCCGg -5'
26720 3' -60 NC_005808.1 + 23535 0.68 0.311192
Target:  5'- aGG-CGGCgCAcGCGGUcgaUGGCcUCGGCCg -3'
miRNA:   3'- -CCgGCCG-GU-CGUCAa--GCCGaAGCCGG- -5'
26720 3' -60 NC_005808.1 + 24210 0.67 0.359075
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 24311 0.69 0.27512
Target:  5'- aGGUCGGCgAGCAGccgCGGgUcaggCGGCa -3'
miRNA:   3'- -CCGGCCGgUCGUCaa-GCCgAa---GCCGg -5'
26720 3' -60 NC_005808.1 + 24322 0.71 0.181485
Target:  5'- cGGCCcgcugacGGCCGGCaAGUucUCGGCgcaGGUCg -3'
miRNA:   3'- -CCGG-------CCGGUCG-UCA--AGCCGaagCCGG- -5'
26720 3' -60 NC_005808.1 + 24422 0.67 0.342557
Target:  5'- aGCCGGCCcgauuuGuCGGUgccgcgcgCGGCcUCGGCg -3'
miRNA:   3'- cCGGCCGGu-----C-GUCAa-------GCCGaAGCCGg -5'
26720 3' -60 NC_005808.1 + 24575 0.69 0.261656
Target:  5'- aGGCCGGCCA-CGGUcgGGCcgucCGGCg -3'
miRNA:   3'- -CCGGCCGGUcGUCAagCCGaa--GCCGg -5'
26720 3' -60 NC_005808.1 + 24647 0.67 0.350747
Target:  5'- uGCCGGCgGGcCAGgaUGGUguugUCGcGCCc -3'
miRNA:   3'- cCGGCCGgUC-GUCaaGCCGa---AGC-CGG- -5'
26720 3' -60 NC_005808.1 + 25348 0.7 0.242473
Target:  5'- aGGCCGGCCAGU---UCGcauaGC--CGGCCa -3'
miRNA:   3'- -CCGGCCGGUCGucaAGC----CGaaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.