miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
26721	5'	-56.1	NC_005808.1	+	5939	1.08	0.000687
	Target:  5'- gGCAUCCCAGACGUACACGGGGCCAUUg -3' miRNA:   3'- -CGUAGGGUCUGCAUGUGCCCCGGUAA- -5'
26721	5'	-56.1	NC_005808.1	+	10065	0.71	0.287223
	Target:  5'- aGCGUCCgAGGCGU-CGuCGGGGCgAg- -3' miRNA:   3'- -CGUAGGgUCUGCAuGU-GCCCCGgUaa -5'
26721	5'	-56.1	NC_005808.1	+	538	0.69	0.377356
	Target:  5'- ---cCUCGGACGUGCGCG-GGCCGc- -3' miRNA:   3'- cguaGGGUCUGCAUGUGCcCCGGUaa -5'
26721	5'	-56.1	NC_005808.1	+	36507	0.68	0.433946
	Target:  5'- cCGUCCaaagcaCAGAuCGgguCGCGGGGCCGUa -3' miRNA:   3'- cGUAGG------GUCU-GCau-GUGCCCCGGUAa -5'
26721	5'	-56.1	NC_005808.1	+	25136	0.67	0.510012
	Target:  5'- uGCAggCCCuGGCGUggcACcuggccucgaugcugGCGGGGCCAc- -3' miRNA:   3'- -CGUa-GGGuCUGCA---UG---------------UGCCCCGGUaa -5'
26721	5'	-56.1	NC_005808.1	+	4514	0.67	0.515362
	Target:  5'- gGCGgcgCCCGugaacguGGCGUGCugGGcGGUCGUg -3' miRNA:   3'- -CGUa--GGGU-------CUGCAUGugCC-CCGGUAa -5'
26721	5'	-56.1	NC_005808.1	+	910	0.66	0.56
	Target:  5'- uCAUCCCGGcCGcgGCAUugagugucagGGGGCCGa- -3' miRNA:   3'- cGUAGGGUCuGCa-UGUG----------CCCCGGUaa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home