miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26722 3' -62.5 NC_005808.1 + 23926 0.66 0.268298
Target:  5'- -cGUGGuguaacAGGcCgGGGGCgGGCGCCGcCc -3'
miRNA:   3'- aaCAUC------UCCaG-CCCCGgCCGCGGCaG- -5'
26722 3' -62.5 NC_005808.1 + 23710 0.67 0.255151
Target:  5'- -gGUAGcgcccAGGUCGcGGGCCaGUGCC-UCg -3'
miRNA:   3'- aaCAUC-----UCCAGC-CCCGGcCGCGGcAG- -5'
26722 3' -62.5 NC_005808.1 + 8139 0.67 0.242537
Target:  5'- gUUGUGGGcGUgCGGGuGUCGGCGCugCGUCc -3'
miRNA:   3'- -AACAUCUcCA-GCCC-CGGCCGCG--GCAG- -5'
26722 3' -62.5 NC_005808.1 + 13297 0.67 0.242537
Target:  5'- aUUGcAGcGcGcCGGGGCCGGCGuuGUa -3'
miRNA:   3'- -AACaUCuC-CaGCCCCGGCCGCggCAg -5'
26722 3' -62.5 NC_005808.1 + 24569 0.67 0.242537
Target:  5'- aUGgcGAGGcCGGccacGGUCGG-GCCGUCc -3'
miRNA:   3'- aACauCUCCaGCC----CCGGCCgCGGCAG- -5'
26722 3' -62.5 NC_005808.1 + 7278 0.67 0.232823
Target:  5'- cUGcuu-GGccUCGGGGCCguagugcucgcggauGGCGCCGUCg -3'
miRNA:   3'- aACaucuCC--AGCCCCGG---------------CCGCGGCAG- -5'
26722 3' -62.5 NC_005808.1 + 10151 0.68 0.207791
Target:  5'- -aGUAGGGGgcguaGGGGCagucGCuGCCGUCg -3'
miRNA:   3'- aaCAUCUCCag---CCCCGgc--CG-CGGCAG- -5'
26722 3' -62.5 NC_005808.1 + 28042 0.68 0.204564
Target:  5'- -gGUAGGGG-CGGGuuucucgucgcuguuGuCCGGCGCCGg- -3'
miRNA:   3'- aaCAUCUCCaGCCC---------------C-GGCCGCGGCag -5'
26722 3' -62.5 NC_005808.1 + 5255 0.69 0.182201
Target:  5'- ---cGGcAGGUCGGGGUCGGCaaugCGUCg -3'
miRNA:   3'- aacaUC-UCCAGCCCCGGCCGcg--GCAG- -5'
26722 3' -62.5 NC_005808.1 + 16916 0.69 0.17743
Target:  5'- -cGUAGGGaUUGGcgauuucguagGGCaCGGCGCCGUCc -3'
miRNA:   3'- aaCAUCUCcAGCC-----------CCG-GCCGCGGCAG- -5'
26722 3' -62.5 NC_005808.1 + 18456 0.71 0.131885
Target:  5'- -cGU-GAcGGUCGcGGcGCCGGCGgCGUCg -3'
miRNA:   3'- aaCAuCU-CCAGC-CC-CGGCCGCgGCAG- -5'
26722 3' -62.5 NC_005808.1 + 4815 1.07 0.000186
Target:  5'- cUUGUAGAGGUCGGGGCCGGCGCCGUCg -3'
miRNA:   3'- -AACAUCUCCAGCCCCGGCCGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.