miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26722 5' -54.3 NC_005808.1 + 38431 0.66 0.656019
Target:  5'- --cGAGGCGGCCGGCUaCCAGaUCgUg -3'
miRNA:   3'- gccUUUCGCCGGUCGAaGGUU-AGgAg -5'
26722 5' -54.3 NC_005808.1 + 1442 0.66 0.644635
Target:  5'- aGGucgauauAGUGGCgGGCUUUUuucaAGUCCUCg -3'
miRNA:   3'- gCCuu-----UCGCCGgUCGAAGG----UUAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 7427 0.67 0.587751
Target:  5'- cCGGAuGGcCGGCCAGCagUUCGG-CUUCg -3'
miRNA:   3'- -GCCUuUC-GCCGGUCGa-AGGUUaGGAG- -5'
26722 5' -54.3 NC_005808.1 + 37024 0.67 0.576454
Target:  5'- aCGGu-GGCGGCCAGCgUUgGcgCCgUCg -3'
miRNA:   3'- -GCCuuUCGCCGGUCGaAGgUuaGG-AG- -5'
26722 5' -54.3 NC_005808.1 + 32075 0.68 0.565206
Target:  5'- gCGGAAAGCguGGCCGGCggucagcagUUCGAUCa-- -3'
miRNA:   3'- -GCCUUUCG--CCGGUCGa--------AGGUUAGgag -5'
26722 5' -54.3 NC_005808.1 + 27496 0.68 0.542893
Target:  5'- aGGAugccGGCGGCCucGGCcgCCAGcUUCUCg -3'
miRNA:   3'- gCCUu---UCGCCGG--UCGaaGGUU-AGGAG- -5'
26722 5' -54.3 NC_005808.1 + 14579 0.68 0.531844
Target:  5'- cCGGGcuGauGCCGGCggCCGAUCCg- -3'
miRNA:   3'- -GCCUuuCgcCGGUCGaaGGUUAGGag -5'
26722 5' -54.3 NC_005808.1 + 1353 0.69 0.51434
Target:  5'- uGGucGGCGGCCuugcGCaUCCGgcgaccgaagcgcaaGUCCUCg -3'
miRNA:   3'- gCCuuUCGCCGGu---CGaAGGU---------------UAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 15093 0.69 0.499219
Target:  5'- cCGaGAAgcuGGCGGCCgaGGCcgCCGgcAUCCUCg -3'
miRNA:   3'- -GC-CUU---UCGCCGG--UCGaaGGU--UAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 28834 0.69 0.488541
Target:  5'- uCGGGuuGCGGCCGGaCUUgccgaagcugucCCAgcgccgcgccacGUCCUCg -3'
miRNA:   3'- -GCCUuuCGCCGGUC-GAA------------GGU------------UAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 24225 0.7 0.436879
Target:  5'- cCGGcGAGCGGCCGauCUUCUcgaugauGUCCUCg -3'
miRNA:   3'- -GCCuUUCGCCGGUc-GAAGGu------UAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 37073 0.71 0.388503
Target:  5'- gCGGAAccugGGCGGCCGGCgu---GUCCUa -3'
miRNA:   3'- -GCCUU----UCGCCGGUCGaagguUAGGAg -5'
26722 5' -54.3 NC_005808.1 + 5091 0.72 0.35242
Target:  5'- uGGAAcaGGCGGCCGGC--CCAgcGUCCg- -3'
miRNA:   3'- gCCUU--UCGCCGGUCGaaGGU--UAGGag -5'
26722 5' -54.3 NC_005808.1 + 1714 0.73 0.302882
Target:  5'- gGGccGGCGuGCCGGCgagggcgUCCAaGUCCUCg -3'
miRNA:   3'- gCCuuUCGC-CGGUCGa------AGGU-UAGGAG- -5'
26722 5' -54.3 NC_005808.1 + 30773 0.74 0.245417
Target:  5'- gCGGc--GCGGCCGGUcugUUCCAGUCCg- -3'
miRNA:   3'- -GCCuuuCGCCGGUCG---AAGGUUAGGag -5'
26722 5' -54.3 NC_005808.1 + 10156 0.75 0.202828
Target:  5'- uGGAAGGCGGUCAGCagCCAGUgUUUu -3'
miRNA:   3'- gCCUUUCGCCGGUCGaaGGUUAgGAG- -5'
26722 5' -54.3 NC_005808.1 + 4851 1.11 0.000556
Target:  5'- aCGGAAAGCGGCCAGCUUCCAAUCCUCg -3'
miRNA:   3'- -GCCUUUCGCCGGUCGAAGGUUAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.