miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26723 3' -54.2 NC_005808.1 + 40898 0.66 0.730472
Target:  5'- gCACGCCggcccaCG-GCGAAUucucgacuaCCugCGCGGc -3'
miRNA:   3'- -GUGCGGaa----GCaCGCUUA---------GGugGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 40623 0.67 0.686863
Target:  5'- gCGCGCCUacagCGUGCcu-UCCcCCAgGGc -3'
miRNA:   3'- -GUGCGGAa---GCACGcuuAGGuGGUgCC- -5'
26723 3' -54.2 NC_005808.1 + 38225 0.66 0.730472
Target:  5'- gGCGCCUggcUGCGcAUCCGCCugccgucCGGc -3'
miRNA:   3'- gUGCGGAagcACGCuUAGGUGGu------GCC- -5'
26723 3' -54.2 NC_005808.1 + 37566 0.67 0.675796
Target:  5'- gACGCCaUCGaGCGGGg-CAUCGCGGc -3'
miRNA:   3'- gUGCGGaAGCaCGCUUagGUGGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 35585 0.66 0.708822
Target:  5'- aACGCCaaguccUCGUucaugGCGAAUCgGgCGCGGa -3'
miRNA:   3'- gUGCGGa-----AGCA-----CGCUUAGgUgGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 33653 0.67 0.653546
Target:  5'- --nGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- gugCGGaaGCa--CGCUUAGGUgGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 33625 0.7 0.49987
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 33583 0.7 0.49987
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 33535 0.7 0.49987
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 33383 0.66 0.741151
Target:  5'- gCGCGCCgcagaaCGUGCGccgcgCCGCCGagcaGGc -3'
miRNA:   3'- -GUGCGGaa----GCACGCuua--GGUGGUg---CC- -5'
26723 3' -54.2 NC_005808.1 + 33282 0.68 0.608885
Target:  5'- cCGCGCCgaCGUGCG---CCGCCA-GGu -3'
miRNA:   3'- -GUGCGGaaGCACGCuuaGGUGGUgCC- -5'
26723 3' -54.2 NC_005808.1 + 32842 0.66 0.708822
Target:  5'- uCugGaCUUCGagGCGAAgcgcgcCCACCACGa -3'
miRNA:   3'- -GugCgGAAGCa-CGCUUa-----GGUGGUGCc -5'
26723 3' -54.2 NC_005808.1 + 31164 0.68 0.620044
Target:  5'- uCGCGCCUuaUCG-GCGA--CCugCACGc -3'
miRNA:   3'- -GUGCGGA--AGCaCGCUuaGGugGUGCc -5'
26723 3' -54.2 NC_005808.1 + 30078 0.69 0.564549
Target:  5'- ---uCCUUUGUGCGGcgCCcgggcGCCACGGc -3'
miRNA:   3'- gugcGGAAGCACGCUuaGG-----UGGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 27744 0.73 0.34703
Target:  5'- gGCGCCcagCGUGCGGcgcuggCCGCCAaCGGc -3'
miRNA:   3'- gUGCGGaa-GCACGCUua----GGUGGU-GCC- -5'
26723 3' -54.2 NC_005808.1 + 26824 0.66 0.719692
Target:  5'- cUAUGCCgUCGUGCG--UCgCACCauugGCGGc -3'
miRNA:   3'- -GUGCGGaAGCACGCuuAG-GUGG----UGCC- -5'
26723 3' -54.2 NC_005808.1 + 26766 0.7 0.510441
Target:  5'- aCACGgaCggCGUGUucGAGUCCugCGCGGu -3'
miRNA:   3'- -GUGCg-GaaGCACG--CUUAGGugGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 26171 0.66 0.751716
Target:  5'- aACGCCgcCG-GCGAuuaCC-CCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGCUua-GGuGGUGCC- -5'
26723 3' -54.2 NC_005808.1 + 25534 0.66 0.708822
Target:  5'- -uCGCCUUCGUGCGcgaggugaagGAUUCgGCCAagaaGGu -3'
miRNA:   3'- guGCGGAAGCACGC----------UUAGG-UGGUg---CC- -5'
26723 3' -54.2 NC_005808.1 + 24554 0.66 0.730472
Target:  5'- uCGCGCagcgCGgcgaugGCGAggCCGgCCACGGu -3'
miRNA:   3'- -GUGCGgaa-GCa-----CGCUuaGGU-GGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.