Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26723 | 3' | -54.2 | NC_005808.1 | + | 26171 | 0.66 | 0.751716 |
Target: 5'- aACGCCgcCG-GCGAuuaCC-CCGCGGc -3' miRNA: 3'- gUGCGGaaGCaCGCUua-GGuGGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 24175 | 0.66 | 0.751716 |
Target: 5'- uGCGCgCUUCG-GCGuGUCCAUgagCGCGa -3' miRNA: 3'- gUGCG-GAAGCaCGCuUAGGUG---GUGCc -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 21603 | 0.66 | 0.751716 |
Target: 5'- gCACGaugCUUUGcUGUGAAUCgGCCuCGGa -3' miRNA: 3'- -GUGCg--GAAGC-ACGCUUAGgUGGuGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 33383 | 0.66 | 0.741151 |
Target: 5'- gCGCGCCgcagaaCGUGCGccgcgCCGCCGagcaGGc -3' miRNA: 3'- -GUGCGGaa----GCACGCuua--GGUGGUg---CC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 23524 | 0.66 | 0.741151 |
Target: 5'- gCGCGCCUUCcagGCGGcgCa--CGCGGu -3' miRNA: 3'- -GUGCGGAAGca-CGCUuaGgugGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 40898 | 0.66 | 0.730472 |
Target: 5'- gCACGCCggcccaCG-GCGAAUucucgacuaCCugCGCGGc -3' miRNA: 3'- -GUGCGGaa----GCaCGCUUA---------GGugGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 24554 | 0.66 | 0.730472 |
Target: 5'- uCGCGCagcgCGgcgaugGCGAggCCGgCCACGGu -3' miRNA: 3'- -GUGCGgaa-GCa-----CGCUuaGGU-GGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 38225 | 0.66 | 0.730472 |
Target: 5'- gGCGCCUggcUGCGcAUCCGCCugccgucCGGc -3' miRNA: 3'- gUGCGGAagcACGCuUAGGUGGu------GCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 23764 | 0.66 | 0.730472 |
Target: 5'- gGCGCCacCGgGCcGAUgCGCCGCGGc -3' miRNA: 3'- gUGCGGaaGCaCGcUUAgGUGGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 26824 | 0.66 | 0.719692 |
Target: 5'- cUAUGCCgUCGUGCG--UCgCACCauugGCGGc -3' miRNA: 3'- -GUGCGGaAGCACGCuuAG-GUGG----UGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 4517 | 0.66 | 0.717525 |
Target: 5'- gGCGCCcgugaacguggCGUGCuGGGcggucgugCCGCCGCGGa -3' miRNA: 3'- gUGCGGaa---------GCACG-CUUa-------GGUGGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 2210 | 0.66 | 0.708823 |
Target: 5'- gACGCCcUCGU-CGggUagCACCACGc -3' miRNA: 3'- gUGCGGaAGCAcGCuuAg-GUGGUGCc -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 32842 | 0.66 | 0.708822 |
Target: 5'- uCugGaCUUCGagGCGAAgcgcgcCCACCACGa -3' miRNA: 3'- -GugCgGAAGCa-CGCUUa-----GGUGGUGCc -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 25534 | 0.66 | 0.708822 |
Target: 5'- -uCGCCUUCGUGCGcgaggugaagGAUUCgGCCAagaaGGu -3' miRNA: 3'- guGCGGAAGCACGC----------UUAGG-UGGUg---CC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 35585 | 0.66 | 0.708822 |
Target: 5'- aACGCCaaguccUCGUucaugGCGAAUCgGgCGCGGa -3' miRNA: 3'- gUGCGGa-----AGCA-----CGCUUAGgUgGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 7778 | 0.66 | 0.697875 |
Target: 5'- uCGCGCCUUCGcccUGCGAG---GCgAUGGg -3' miRNA: 3'- -GUGCGGAAGC---ACGCUUaggUGgUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 40623 | 0.67 | 0.686863 |
Target: 5'- gCGCGCCUacagCGUGCcu-UCCcCCAgGGc -3' miRNA: 3'- -GUGCGGAa---GCACGcuuAGGuGGUgCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 37566 | 0.67 | 0.675796 |
Target: 5'- gACGCCaUCGaGCGGGg-CAUCGCGGc -3' miRNA: 3'- gUGCGGaAGCaCGCUUagGUGGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 33653 | 0.67 | 0.653546 |
Target: 5'- --nGCCacCGcugGCGAAUCCGgCACGGc -3' miRNA: 3'- gugCGGaaGCa--CGCUUAGGUgGUGCC- -5' |
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26723 | 3' | -54.2 | NC_005808.1 | + | 15287 | 0.67 | 0.65243 |
Target: 5'- gCGCGCCUgugggcgUCGUGgGAAgccUUCGCCAaGGc -3' miRNA: 3'- -GUGCGGA-------AGCACgCUU---AGGUGGUgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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