miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26723 5' -58.6 NC_005808.1 + 18820 0.66 0.475402
Target:  5'- aUCCAUcuucguagccGCGGCGCAUCgGCcCGgugGCg -3'
miRNA:   3'- gGGGUA----------CGCCGCGUAGgCGaGUa--CGa -5'
26723 5' -58.6 NC_005808.1 + 14688 0.66 0.445505
Target:  5'- uCCaCgGUGCugGGUGcCAUCCGCgaCGUGCUg -3'
miRNA:   3'- -GG-GgUACG--CCGC-GUAGGCGa-GUACGA- -5'
26723 5' -58.6 NC_005808.1 + 1034 0.66 0.445505
Target:  5'- -gCCAUGCugaacgugccguGGCGUAUUCGCUCgcggauuuccuGUGCg -3'
miRNA:   3'- ggGGUACG------------CCGCGUAGGCGAG-----------UACGa -5'
26723 5' -58.6 NC_005808.1 + 27456 0.67 0.407339
Target:  5'- gCCC-UG-GGCGCAUCCGCcgccagCAUGg- -3'
miRNA:   3'- gGGGuACgCCGCGUAGGCGa-----GUACga -5'
26723 5' -58.6 NC_005808.1 + 7890 0.68 0.326978
Target:  5'- gUCCAggGCGGCGCGUgcguagaucgccagCUGCUCGuUGCg -3'
miRNA:   3'- gGGGUa-CGCCGCGUA--------------GGCGAGU-ACGa -5'
26723 5' -58.6 NC_005808.1 + 42428 0.69 0.305958
Target:  5'- gCCCAgcgacaccGgGGCGCAUCCGC-C-UGCg -3'
miRNA:   3'- gGGGUa-------CgCCGCGUAGGCGaGuACGa -5'
26723 5' -58.6 NC_005808.1 + 18517 0.69 0.283835
Target:  5'- gCCCGUGCcccGCGCGgucgCCGCUacuGUGCg -3'
miRNA:   3'- gGGGUACGc--CGCGUa---GGCGAg--UACGa -5'
26723 5' -58.6 NC_005808.1 + 27747 0.7 0.262996
Target:  5'- gCCCAgcgUGCGGCGCuggCCGC-CAacgGCa -3'
miRNA:   3'- gGGGU---ACGCCGCGua-GGCGaGUa--CGa -5'
26723 5' -58.6 NC_005808.1 + 3713 1.08 0.000351
Target:  5'- gCCCCAUGCGGCGCAUCCGCUCAUGCUc -3'
miRNA:   3'- -GGGGUACGCCGCGUAGGCGAGUACGA- -5'
26723 5' -58.6 NC_005808.1 + 16818 0.66 0.426168
Target:  5'- gCCCAgGCGGCGCAguUCaCGCg---GCg -3'
miRNA:   3'- gGGGUaCGCCGCGU--AG-GCGaguaCGa -5'
26723 5' -58.6 NC_005808.1 + 26047 0.67 0.389039
Target:  5'- gCCCGcGCGGCGgG-CgCGCUcCAUGCg -3'
miRNA:   3'- gGGGUaCGCCGCgUaG-GCGA-GUACGa -5'
26723 5' -58.6 NC_005808.1 + 15136 0.67 0.389039
Target:  5'- aCCCCAUgcugGCGGCGgAUgCGCcCAggGCg -3'
miRNA:   3'- -GGGGUA----CGCCGCgUAgGCGaGUa-CGa -5'
26723 5' -58.6 NC_005808.1 + 32768 0.67 0.386341
Target:  5'- cCCCCAagaagGCGGCGaaGUCCGCccucggcaccucgcUgGUGCUg -3'
miRNA:   3'- -GGGGUa----CGCCGCg-UAGGCG--------------AgUACGA- -5'
26723 5' -58.6 NC_005808.1 + 28476 0.68 0.354096
Target:  5'- uCgCCGUaGUGGUcgaGCAUCCGCUCG-GCa -3'
miRNA:   3'- -GgGGUA-CGCCG---CGUAGGCGAGUaCGa -5'
26723 5' -58.6 NC_005808.1 + 20549 0.69 0.305958
Target:  5'- -aCgAUGCGGCGCccCCGCUUGcUGCUc -3'
miRNA:   3'- ggGgUACGCCGCGuaGGCGAGU-ACGA- -5'
26723 5' -58.6 NC_005808.1 + 15374 0.7 0.237166
Target:  5'- aCCUcgGUGaGCGCGUCCGC--GUGCg -3'
miRNA:   3'- gGGGuaCGC-CGCGUAGGCGagUACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.