miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26724 5' -54.9 NC_005808.1 + 241 0.66 0.697875
Target:  5'- uGGCgCGCUGggUUu---CCCCGGUGGu -3'
miRNA:   3'- -UUG-GUGGCuuAGcuuuGGGGCCACCc -5'
26724 5' -54.9 NC_005808.1 + 871 0.66 0.65243
Target:  5'- uGCgaGCCGAGUUGAAcagcaggGCCagcaUGGUGGGg -3'
miRNA:   3'- uUGg-UGGCUUAGCUU-------UGGg---GCCACCC- -5'
26724 5' -54.9 NC_005808.1 + 3109 1.08 0.001074
Target:  5'- cAACCACCGAAUCGAAACCCCGGUGGGu -3'
miRNA:   3'- -UUGGUGGCUUAGCUUUGGGGCCACCC- -5'
26724 5' -54.9 NC_005808.1 + 5590 0.67 0.642384
Target:  5'- cGCCACCGuGUCGAuguccGCCUCGuUGGu -3'
miRNA:   3'- uUGGUGGCuUAGCUu----UGGGGCcACCc -5'
26724 5' -54.9 NC_005808.1 + 8715 0.66 0.697875
Target:  5'- uGCUGCCGAAcaCGAagauGugCCCGGcGGGc -3'
miRNA:   3'- uUGGUGGCUUa-GCU----UugGGGCCaCCC- -5'
26724 5' -54.9 NC_005808.1 + 9088 0.67 0.596634
Target:  5'- -cUCACUGGccgCGAGGCCguucuugCCGGUGGGc -3'
miRNA:   3'- uuGGUGGCUua-GCUUUGG-------GGCCACCC- -5'
26724 5' -54.9 NC_005808.1 + 13031 0.67 0.597747
Target:  5'- cGGCCgACCuGAcgCGAuACCCCGagcacggcGUGGGu -3'
miRNA:   3'- -UUGG-UGG-CUuaGCUuUGGGGC--------CACCC- -5'
26724 5' -54.9 NC_005808.1 + 13542 0.68 0.564549
Target:  5'- -cCCGCUGAuggccuaCG-AGCCgCCGGUGGGu -3'
miRNA:   3'- uuGGUGGCUua-----GCuUUGG-GGCCACCC- -5'
26724 5' -54.9 NC_005808.1 + 16513 0.66 0.675795
Target:  5'- uACCACUGGAUUGAGgcccGCCCCGaGUu-- -3'
miRNA:   3'- uUGGUGGCUUAGCUU----UGGGGC-CAccc -5'
26724 5' -54.9 NC_005808.1 + 16872 0.66 0.686862
Target:  5'- uGCCGCCGGugaggaCGAcGACCCCGccgcGGGg -3'
miRNA:   3'- uUGGUGGCUua----GCU-UUGGGGCca--CCC- -5'
26724 5' -54.9 NC_005808.1 + 17434 0.66 0.697875
Target:  5'- -cCCGCCGAccacgagCGAGGgC-CGGUGGGu -3'
miRNA:   3'- uuGGUGGCUua-----GCUUUgGgGCCACCC- -5'
26724 5' -54.9 NC_005808.1 + 18542 0.66 0.697875
Target:  5'- uGGCCugGCCGaAGUCGAucACgUCGGUGGa -3'
miRNA:   3'- -UUGG--UGGC-UUAGCUu-UGgGGCCACCc -5'
26724 5' -54.9 NC_005808.1 + 18963 0.66 0.672467
Target:  5'- cGCCGCCGGcuaccgCGAAACCaaccgcacguuuuaCCGG-GGGc -3'
miRNA:   3'- uUGGUGGCUua----GCUUUGG--------------GGCCaCCC- -5'
26724 5' -54.9 NC_005808.1 + 28023 0.67 0.597747
Target:  5'- cGGCCGCCGGcAUC---AgCCCGGUaGGGg -3'
miRNA:   3'- -UUGGUGGCU-UAGcuuUgGGGCCA-CCC- -5'
26724 5' -54.9 NC_005808.1 + 30913 0.68 0.541597
Target:  5'- --gCACCGGAUacaGAAgggcaucaaucgcGCCCCaGUGGGg -3'
miRNA:   3'- uugGUGGCUUAg--CUU-------------UGGGGcCACCC- -5'
26724 5' -54.9 NC_005808.1 + 34912 0.66 0.686862
Target:  5'- cGGCCGCCGAGgucaagcCGAcgaccuGGcCCCCGGUGa- -3'
miRNA:   3'- -UUGGUGGCUUa------GCU------UU-GGGGCCACcc -5'
26724 5' -54.9 NC_005808.1 + 35530 0.73 0.314406
Target:  5'- aGGCCGCgGcGUCauGAAguaccuggccGCCCCGGUGGGu -3'
miRNA:   3'- -UUGGUGgCuUAG--CUU----------UGGGGCCACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.