miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26725 5' -58.6 NC_005808.1 + 2371 1.06 0.000478
Target:  5'- aCGGCAACGGUUCGAGGCGCACGGCAUg -3'
miRNA:   3'- -GCCGUUGCCAAGCUCCGCGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 15420 0.74 0.136549
Target:  5'- gCGGCAAgGGUcgUCGAGGCauccgcGUGCGGCGc -3'
miRNA:   3'- -GCCGUUgCCA--AGCUCCG------CGUGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 10871 0.73 0.148399
Target:  5'- uGGCuuCGGUcggcgCGAuGCGCGCGGCGUa -3'
miRNA:   3'- gCCGuuGCCAa----GCUcCGCGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 18441 0.72 0.174942
Target:  5'- gCGcGCAGCcg-UCGAGGCGCugGGCc- -3'
miRNA:   3'- -GC-CGUUGccaAGCUCCGCGugCCGua -5'
26725 5' -58.6 NC_005808.1 + 32590 0.72 0.179758
Target:  5'- gGGCGGgGGc-CG-GGCGCGCGGCAc -3'
miRNA:   3'- gCCGUUgCCaaGCuCCGCGUGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 28056 0.72 0.184192
Target:  5'- uCGGCGACGGUcugcUCGAacagcgggcagguGGC-CGCGGCGUc -3'
miRNA:   3'- -GCCGUUGCCA----AGCU-------------CCGcGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 25776 0.72 0.189742
Target:  5'- gCGGCAACGauggccgCGAuGCGCGCGGCGc -3'
miRNA:   3'- -GCCGUUGCcaa----GCUcCGCGUGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 28747 0.72 0.199676
Target:  5'- uGGCAucguccagcGCGGUgcgcuucUCGGcGCGCACGGCGUc -3'
miRNA:   3'- gCCGU---------UGCCA-------AGCUcCGCGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 6254 0.71 0.22266
Target:  5'- cCGGUAACGGUgcggUUGAucuGcGCGCugGGCAg -3'
miRNA:   3'- -GCCGUUGCCA----AGCU---C-CGCGugCCGUa -5'
26725 5' -58.6 NC_005808.1 + 39678 0.71 0.22266
Target:  5'- gGGCcgucgaacucgAACGcGaacaUCGGGGCGCGCGGCGUc -3'
miRNA:   3'- gCCG-----------UUGC-Ca---AGCUCCGCGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 38968 0.71 0.228597
Target:  5'- gGGUAACGaGUUCGGcGGCGUgaAUGGCGc -3'
miRNA:   3'- gCCGUUGC-CAAGCU-CCGCG--UGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 32930 0.7 0.253693
Target:  5'- aCGGCGGCuGUUCGgccaGGGCGacCACGGCu- -3'
miRNA:   3'- -GCCGUUGcCAAGC----UCCGC--GUGCCGua -5'
26725 5' -58.6 NC_005808.1 + 14786 0.7 0.253693
Target:  5'- gGGCAGCGcGcgCGAGGacgugcugcggcUGCGCGGCGc -3'
miRNA:   3'- gCCGUUGC-CaaGCUCC------------GCGUGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 10267 0.7 0.260311
Target:  5'- gGGCGGCGGUugUCGGGaCGC-CGGCc- -3'
miRNA:   3'- gCCGUUGCCA--AGCUCcGCGuGCCGua -5'
26725 5' -58.6 NC_005808.1 + 39139 0.7 0.260311
Target:  5'- -cGCGAaca-UCGGGGCGCGCGGCGUc -3'
miRNA:   3'- gcCGUUgccaAGCUCCGCGUGCCGUA- -5'
26725 5' -58.6 NC_005808.1 + 26850 0.7 0.266387
Target:  5'- gCGGCAacgagguGCGGUaugUCGA-GCGCAUGGCc- -3'
miRNA:   3'- -GCCGU-------UGCCA---AGCUcCGCGUGCCGua -5'
26725 5' -58.6 NC_005808.1 + 17857 0.7 0.267069
Target:  5'- -aGCAugGG-UCGAGGcCGCGCaGGCGc -3'
miRNA:   3'- gcCGUugCCaAGCUCC-GCGUG-CCGUa -5'
26725 5' -58.6 NC_005808.1 + 19331 0.69 0.28101
Target:  5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3'
miRNA:   3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 34964 0.69 0.283866
Target:  5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3'
miRNA:   3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5'
26725 5' -58.6 NC_005808.1 + 8628 0.69 0.295522
Target:  5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3'
miRNA:   3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.