Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26725 | 5' | -58.6 | NC_005808.1 | + | 13253 | 0.67 | 0.403865 |
Target: 5'- cCGGCgcgUGGUUCGAGGacuugGC-CGGCGa -3' miRNA: 3'- -GCCGuu-GCCAAGCUCCg----CGuGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 22071 | 0.67 | 0.394686 |
Target: 5'- gGGUcGCGGUc---GGCGCGCGGCu- -3' miRNA: 3'- gCCGuUGCCAagcuCCGCGUGCCGua -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 18456 | 0.67 | 0.394686 |
Target: 5'- -cGUGACGG-UCGcGGCGCcgGCGGCGUc -3' miRNA: 3'- gcCGUUGCCaAGCuCCGCG--UGCCGUA- -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 7597 | 0.67 | 0.385642 |
Target: 5'- uCGGCGACGGUggacagcaCGuGGuCGCGCaGCGc -3' miRNA: 3'- -GCCGUUGCCAa-------GCuCC-GCGUGcCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 2409 | 0.67 | 0.376737 |
Target: 5'- gGGCGGCaag-CGuAGGUGUACGGCAg -3' miRNA: 3'- gCCGUUGccaaGC-UCCGCGUGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 14893 | 0.67 | 0.376737 |
Target: 5'- cCGGCGGCGagcCGcugccGGCGCGCGGCc- -3' miRNA: 3'- -GCCGUUGCcaaGCu----CCGCGUGCCGua -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 18836 | 0.67 | 0.367971 |
Target: 5'- gCGGCGcauCGGccCGGuGGCGC-CGGCAUg -3' miRNA: 3'- -GCCGUu--GCCaaGCU-CCGCGuGCCGUA- -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 26199 | 0.68 | 0.350023 |
Target: 5'- uGGCuuCGGUguaggUCGAGGCGUuuuucauGCGcGCAg -3' miRNA: 3'- gCCGuuGCCA-----AGCUCCGCG-------UGC-CGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 33164 | 0.68 | 0.334329 |
Target: 5'- gGGCGAUGGUggaguugCGgaaguGGGCGCccuCGGCAc -3' miRNA: 3'- gCCGUUGCCAa------GC-----UCCGCGu--GCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 9320 | 0.68 | 0.326278 |
Target: 5'- uGGCGGCGcacgUCGGcgcGGCGgGCGGCGg -3' miRNA: 3'- gCCGUUGCca--AGCU---CCGCgUGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 34426 | 0.68 | 0.326278 |
Target: 5'- cCGGCAGCa--UCcGGGCGCACGcGCAg -3' miRNA: 3'- -GCCGUUGccaAGcUCCGCGUGC-CGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 34555 | 0.68 | 0.318372 |
Target: 5'- uCGaGCAGCGGUugagcgUCGAGGCuGuCAcCGGCGa -3' miRNA: 3'- -GC-CGUUGCCA------AGCUCCG-C-GU-GCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 29068 | 0.68 | 0.318372 |
Target: 5'- gCGGcCGACaGUUCGGcGCGgACGGCAa -3' miRNA: 3'- -GCC-GUUGcCAAGCUcCGCgUGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 9062 | 0.69 | 0.310611 |
Target: 5'- uCGGCcACGGUaUCGGGGUGCAuccccucacUGGCc- -3' miRNA: 3'- -GCCGuUGCCA-AGCUCCGCGU---------GCCGua -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 15452 | 0.69 | 0.310611 |
Target: 5'- -nGCGugGGggacUUCGAGugauGCGCGCGGCGUc -3' miRNA: 3'- gcCGUugCC----AAGCUC----CGCGUGCCGUA- -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 15297 | 0.69 | 0.302994 |
Target: 5'- gGGCgucGugGGaagccUUCGccaAGGCGCGCGGCGa -3' miRNA: 3'- gCCG---UugCC-----AAGC---UCCGCGUGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 8628 | 0.69 | 0.295522 |
Target: 5'- uCGGCcgcuGCGGUggCGAGGuCGC-CGGCc- -3' miRNA: 3'- -GCCGu---UGCCAa-GCUCC-GCGuGCCGua -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 34964 | 0.69 | 0.283866 |
Target: 5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3' miRNA: 3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 19331 | 0.69 | 0.28101 |
Target: 5'- aGGC-GCGGUcuUCGgacAGGCGCcagGCGGCGg -3' miRNA: 3'- gCCGuUGCCA--AGC---UCCGCG---UGCCGUa -5' |
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26725 | 5' | -58.6 | NC_005808.1 | + | 17857 | 0.7 | 0.267069 |
Target: 5'- -aGCAugGG-UCGAGGcCGCGCaGGCGc -3' miRNA: 3'- gcCGUugCCaAGCUCC-GCGUG-CCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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