miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26727 5' -55.7 NC_005808.1 + 1740 1.11 0.000448
Target:  5'- gUAGAUGAACACCGGGCGGUCAUGGCCg -3'
miRNA:   3'- -AUCUACUUGUGGCCCGCCAGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 4523 0.74 0.20303
Target:  5'- --cGUGAACguggcguGCUGGGCGGUCGUGccGCCg -3'
miRNA:   3'- aucUACUUG-------UGGCCCGCCAGUAC--CGG- -5'
26727 5' -55.7 NC_005808.1 + 29612 0.73 0.232939
Target:  5'- cAGuUGuccAGCGCCGGGCGcUUGUGGCCg -3'
miRNA:   3'- aUCuAC---UUGUGGCCCGCcAGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 17910 0.73 0.258922
Target:  5'- -cGAUGGACAgcCUGGGCguGGaCGUGGCCc -3'
miRNA:   3'- auCUACUUGU--GGCCCG--CCaGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 37836 0.73 0.252212
Target:  5'- gUGGgcGAACGCCGagaacaucGCGGcCGUGGCCg -3'
miRNA:   3'- -AUCuaCUUGUGGCc-------CGCCaGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 11023 0.7 0.386438
Target:  5'- -cGAUGAacaccugcuGCACCGGGCcGUUcucGGCCg -3'
miRNA:   3'- auCUACU---------UGUGGCCCGcCAGua-CCGG- -5'
26727 5' -55.7 NC_005808.1 + 22479 0.69 0.424173
Target:  5'- aGGcgGAACcaggggcggGCUGGGCuGGUCAUGcccGCCa -3'
miRNA:   3'- aUCuaCUUG---------UGGCCCG-CCAGUAC---CGG- -5'
26727 5' -55.7 NC_005808.1 + 1440 0.69 0.414532
Target:  5'- aAGAUGGcaaACACCuucuugacGGcGCGGUCGgcGGCCu -3'
miRNA:   3'- aUCUACU---UGUGG--------CC-CGCCAGUa-CCGG- -5'
26727 5' -55.7 NC_005808.1 + 6205 0.69 0.433946
Target:  5'- cAGGUGAcgGCGCgCGGcuccUGGUCGUGGUCu -3'
miRNA:   3'- aUCUACU--UGUG-GCCc---GCCAGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 18855 0.67 0.538066
Target:  5'- ----aGAAgGCCGGGCGGccCAUGcCCa -3'
miRNA:   3'- aucuaCUUgUGGCCCGCCa-GUACcGG- -5'
26727 5' -55.7 NC_005808.1 + 9861 0.67 0.527209
Target:  5'- ---uUGGugG--GGGCGGUCAUGGCg -3'
miRNA:   3'- aucuACUugUggCCCGCCAGUACCGg -5'
26727 5' -55.7 NC_005808.1 + 6614 0.66 0.626969
Target:  5'- -cGAUGAcCAgCGGGCG--CGUGGCg -3'
miRNA:   3'- auCUACUuGUgGCCCGCcaGUACCGg -5'
26727 5' -55.7 NC_005808.1 + 31376 0.66 0.626969
Target:  5'- gGGcGUGGGCGggaaCGuGGCGGUCAUGcGCg -3'
miRNA:   3'- aUC-UACUUGUg---GC-CCGCCAGUAC-CGg -5'
26727 5' -55.7 NC_005808.1 + 17287 0.66 0.615739
Target:  5'- -cGAcGAGCGCC-GGUGG-CAgGGCCg -3'
miRNA:   3'- auCUaCUUGUGGcCCGCCaGUaCCGG- -5'
26727 5' -55.7 NC_005808.1 + 31017 0.66 0.615739
Target:  5'- cAGccGGcgGCcCUGGGCGG-CAUGGCUu -3'
miRNA:   3'- aUCuaCU--UGuGGCCCGCCaGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 10213 0.66 0.615739
Target:  5'- -cGGUGcuGGCuuccuGCUGGGCGGcCggGGCCu -3'
miRNA:   3'- auCUAC--UUG-----UGGCCCGCCaGuaCCGG- -5'
26727 5' -55.7 NC_005808.1 + 34823 0.66 0.615739
Target:  5'- aGGGUGGACGCCGGcGCaGaUCGc-GCCg -3'
miRNA:   3'- aUCUACUUGUGGCC-CGcC-AGUacCGG- -5'
26727 5' -55.7 NC_005808.1 + 1366 0.66 0.604523
Target:  5'- gGGAUGGugacauaggGCGCCGcGGCcacgcgcacaacGGuuucacUCAUGGCCg -3'
miRNA:   3'- aUCUACU---------UGUGGC-CCG------------CC------AGUACCGG- -5'
26727 5' -55.7 NC_005808.1 + 41606 0.66 0.593332
Target:  5'- -cGGUGAaccacgGCACCGgccaGGCGGcCAagUGGCUg -3'
miRNA:   3'- auCUACU------UGUGGC----CCGCCaGU--ACCGG- -5'
26727 5' -55.7 NC_005808.1 + 7158 0.66 0.582175
Target:  5'- cUGGAUGAccaGgGCCGGGCGcuuGUCGgauucgggGGCg -3'
miRNA:   3'- -AUCUACU---UgUGGCCCGC---CAGUa-------CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.