miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 3' -62.2 NC_005808.1 + 15386 0.67 0.270856
Target:  5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3'
miRNA:   3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 33843 0.67 0.266884
Target:  5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 18941 0.68 0.257799
Target:  5'- gGUCGCcuGguGCAGuugcuGCCG-CCGCCGGc -3'
miRNA:   3'- gCAGCG--CguCGUC-----CGGCaGGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 39099 0.68 0.25716
Target:  5'- -cUCGCGCugcguacugguacAGCGGGCCGUCgaacuCGCCcgcgaacaucGGGg -3'
miRNA:   3'- gcAGCGCG-------------UCGUCCGGCAG-----GCGG----------UCC- -5'
26728 3' -62.2 NC_005808.1 + 10478 0.68 0.253984
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5'
26728 3' -62.2 NC_005808.1 + 33930 0.68 0.251466
Target:  5'- gGUCGCGCGGCAcgcaauGCCGaCCGCgcgaugaAGGc -3'
miRNA:   3'- gCAGCGCGUCGUc-----CGGCaGGCGg------UCC- -5'
26728 3' -62.2 NC_005808.1 + 2232 0.68 0.245262
Target:  5'- --aCGCGCAGCAGGCgG--CGCguGGc -3'
miRNA:   3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5'
26728 3' -62.2 NC_005808.1 + 30460 0.68 0.245262
Target:  5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3'
miRNA:   3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 6466 0.68 0.245262
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26728 3' -62.2 NC_005808.1 + 5240 0.68 0.239185
Target:  5'- -uUCGCGCAGUucGGCCGgCagGUCGGGg -3'
miRNA:   3'- gcAGCGCGUCGu-CCGGCaGg-CGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 34858 0.68 0.239185
Target:  5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3'
miRNA:   3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5'
26728 3' -62.2 NC_005808.1 + 12459 0.68 0.239185
Target:  5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3'
miRNA:   3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5'
26728 3' -62.2 NC_005808.1 + 27185 0.68 0.233235
Target:  5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3'
miRNA:   3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5'
26728 3' -62.2 NC_005808.1 + 14038 0.68 0.233235
Target:  5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3'
miRNA:   3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 4414 0.68 0.231474
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 1107 0.68 0.22741
Target:  5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3'
miRNA:   3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 12008 0.69 0.21067
Target:  5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3'
miRNA:   3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5'
26728 3' -62.2 NC_005808.1 + 10889 0.69 0.20533
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26728 3' -62.2 NC_005808.1 + 32004 0.69 0.200108
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26728 3' -62.2 NC_005808.1 + 23738 0.69 0.195002
Target:  5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3'
miRNA:   3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.