Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26728 | 5' | -53 | NC_005808.1 | + | 13480 | 0.69 | 0.6144 |
Target: 5'- gCAUGAccUGGGCGAUGCCgAccgcgccuuuGGGCGa -3' miRNA: 3'- -GUGCUuuAUCUGCUACGGgU----------CCCGCg -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 8158 | 0.7 | 0.5139 |
Target: 5'- uCACGucgauGAUGcgGCCCAGgaaGGCGCu -3' miRNA: 3'- -GUGCuuuauCUGCuaCGGGUC---CCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 27126 | 0.69 | 0.580413 |
Target: 5'- gGCGAugcaacUGGACGGcagcuucgGCCaAGGGCGCg -3' miRNA: 3'- gUGCUuu----AUCUGCUa-------CGGgUCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 12282 | 0.68 | 0.637157 |
Target: 5'- aCGCGAAGUAcACGcaaagcgGCUCgcaGGGGCGCu -3' miRNA: 3'- -GUGCUUUAUcUGCua-----CGGG---UCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 18813 | 0.67 | 0.693762 |
Target: 5'- cCACGGAauccaucuucGUAGccGCGGcgcaucgGCCCGGuGGCGCc -3' miRNA: 3'- -GUGCUU----------UAUC--UGCUa------CGGGUC-CCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 22421 | 0.67 | 0.704941 |
Target: 5'- gACGAca-AGGCGAaGCCgCAaGGCGCa -3' miRNA: 3'- gUGCUuuaUCUGCUaCGG-GUcCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 7018 | 0.66 | 0.780353 |
Target: 5'- uCGCGuGAUGGGCGuuuGUGCCgccuguugCAGcaGGCGCa -3' miRNA: 3'- -GUGCuUUAUCUGC---UACGG--------GUC--CCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 41289 | 0.66 | 0.790569 |
Target: 5'- gGCcuGGUGGcCGucGCCCuGGGCGCg -3' miRNA: 3'- gUGcuUUAUCuGCuaCGGGuCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 15171 | 0.7 | 0.5139 |
Target: 5'- uGCGGccgccgGGcGCGGUGCgCCAGGcGCGCg -3' miRNA: 3'- gUGCUuua---UC-UGCUACG-GGUCC-CGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 25300 | 0.71 | 0.471321 |
Target: 5'- -cCGGAAUGGAUGcgcGCCCGcGGCGCc -3' miRNA: 3'- guGCUUUAUCUGCua-CGGGUcCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 7999 | 0.71 | 0.460955 |
Target: 5'- cCACGgcGUcGGACG-UGCCCuuGGCGCc -3' miRNA: 3'- -GUGCuuUA-UCUGCuACGGGucCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 36310 | 0.71 | 0.45071 |
Target: 5'- aAUGucGUGGGCGAccuguucggccUGCCCAGcGCGCa -3' miRNA: 3'- gUGCuuUAUCUGCU-----------ACGGGUCcCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 32137 | 0.72 | 0.430604 |
Target: 5'- gCGCGAcuuccaGGGCGAcGCCaAGGGCGCc -3' miRNA: 3'- -GUGCUuua---UCUGCUaCGGgUCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 9399 | 0.72 | 0.401458 |
Target: 5'- cCGCGAuagccagcGGUGGcCG-UGCCgAGGGCGCc -3' miRNA: 3'- -GUGCU--------UUAUCuGCuACGGgUCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 13859 | 0.73 | 0.392026 |
Target: 5'- cCGCGc--UGGACGAUGCCaa-GGCGCu -3' miRNA: 3'- -GUGCuuuAUCUGCUACGGgucCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 17920 | 0.74 | 0.330164 |
Target: 5'- cCugGgcGUGGACGugGCCCGcggcGGGCGCg -3' miRNA: 3'- -GugCuuUAUCUGCuaCGGGU----CCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 8724 | 0.76 | 0.261643 |
Target: 5'- aCACGA---AGAUG-UGCCCGgcGGGCGCg -3' miRNA: 3'- -GUGCUuuaUCUGCuACGGGU--CCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 42417 | 0.77 | 0.222706 |
Target: 5'- aGCGu----GACGGUGCCCagcgacaccGGGGCGCa -3' miRNA: 3'- gUGCuuuauCUGCUACGGG---------UCCCGCG- -5' |
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26728 | 5' | -53 | NC_005808.1 | + | 12560 | 0.66 | 0.790569 |
Target: 5'- uGCGAAuacGUGGuguGggGCaCCaAGGGCGCg -3' miRNA: 3'- gUGCUU---UAUCug-CuaCG-GG-UCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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