miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26728 5' -53 NC_005808.1 + 379 1.11 0.000849
Target:  5'- aCACGAAAUAGACGAUGCCCAGGGCGCc -3'
miRNA:   3'- -GUGCUUUAUCUGCUACGGGUCCCGCG- -5'
26728 5' -53 NC_005808.1 + 1600 0.66 0.737969
Target:  5'- aCACGggGUcGAgGGUcgGCCCuucguagucGGGCGUg -3'
miRNA:   3'- -GUGCuuUAuCUgCUA--CGGGu--------CCCGCG- -5'
26728 5' -53 NC_005808.1 + 7018 0.66 0.780353
Target:  5'- uCGCGuGAUGGGCGuuuGUGCCgccuguugCAGcaGGCGCa -3'
miRNA:   3'- -GUGCuUUAUCUGC---UACGG--------GUC--CCGCG- -5'
26728 5' -53 NC_005808.1 + 7112 0.75 0.298178
Target:  5'- gCACGA--UGGACugcguGAUGCCCagcgguugcauaAGGGCGCu -3'
miRNA:   3'- -GUGCUuuAUCUG-----CUACGGG------------UCCCGCG- -5'
26728 5' -53 NC_005808.1 + 7999 0.71 0.460955
Target:  5'- cCACGgcGUcGGACG-UGCCCuuGGCGCc -3'
miRNA:   3'- -GUGCuuUA-UCUGCuACGGGucCCGCG- -5'
26728 5' -53 NC_005808.1 + 8158 0.7 0.5139
Target:  5'- uCACGucgauGAUGcgGCCCAGgaaGGCGCu -3'
miRNA:   3'- -GUGCuuuauCUGCuaCGGGUC---CCGCG- -5'
26728 5' -53 NC_005808.1 + 8724 0.76 0.261643
Target:  5'- aCACGA---AGAUG-UGCCCGgcGGGCGCg -3'
miRNA:   3'- -GUGCUuuaUCUGCuACGGGU--CCCGCG- -5'
26728 5' -53 NC_005808.1 + 9399 0.72 0.401458
Target:  5'- cCGCGAuagccagcGGUGGcCG-UGCCgAGGGCGCc -3'
miRNA:   3'- -GUGCU--------UUAUCuGCuACGGgUCCCGCG- -5'
26728 5' -53 NC_005808.1 + 9728 0.66 0.748768
Target:  5'- -uCGAAGccgcGGGCGAacUGCUCGugguGGGCGCg -3'
miRNA:   3'- guGCUUUa---UCUGCU--ACGGGU----CCCGCG- -5'
26728 5' -53 NC_005808.1 + 12282 0.68 0.637157
Target:  5'- aCGCGAAGUAcACGcaaagcgGCUCgcaGGGGCGCu -3'
miRNA:   3'- -GUGCUUUAUcUGCua-----CGGG---UCCCGCG- -5'
26728 5' -53 NC_005808.1 + 12560 0.66 0.790569
Target:  5'- uGCGAAuacGUGGuguGggGCaCCaAGGGCGCg -3'
miRNA:   3'- gUGCUU---UAUCug-CuaCG-GG-UCCCGCG- -5'
26728 5' -53 NC_005808.1 + 13372 0.83 0.092036
Target:  5'- uCugGAAAUAGGCcAUGCCCAGcGCGCg -3'
miRNA:   3'- -GugCUUUAUCUGcUACGGGUCcCGCG- -5'
26728 5' -53 NC_005808.1 + 13480 0.69 0.6144
Target:  5'- gCAUGAccUGGGCGAUGCCgAccgcgccuuuGGGCGa -3'
miRNA:   3'- -GUGCUuuAUCUGCUACGGgU----------CCCGCg -5'
26728 5' -53 NC_005808.1 + 13859 0.73 0.392026
Target:  5'- cCGCGc--UGGACGAUGCCaa-GGCGCu -3'
miRNA:   3'- -GUGCuuuAUCUGCUACGGgucCCGCG- -5'
26728 5' -53 NC_005808.1 + 14052 0.79 0.159535
Target:  5'- gCGCGAAAgcccggcgcUGGGCGucguUGCCUAGGGUGCc -3'
miRNA:   3'- -GUGCUUU---------AUCUGCu---ACGGGUCCCGCG- -5'
26728 5' -53 NC_005808.1 + 14407 0.66 0.748768
Target:  5'- aGCGAAGcUGGGCGucg-CCAGGcGCGCc -3'
miRNA:   3'- gUGCUUU-AUCUGCuacgGGUCC-CGCG- -5'
26728 5' -53 NC_005808.1 + 15031 0.66 0.75944
Target:  5'- cCGCGuuGGUGuuGGCGAUGCCCGcguugaugcGGGCa- -3'
miRNA:   3'- -GUGCu-UUAU--CUGCUACGGGU---------CCCGcg -5'
26728 5' -53 NC_005808.1 + 15146 0.68 0.625775
Target:  5'- gGCGGc--GGAUGc-GCCCAGGGCGa -3'
miRNA:   3'- gUGCUuuaUCUGCuaCGGGUCCCGCg -5'
26728 5' -53 NC_005808.1 + 15171 0.7 0.5139
Target:  5'- uGCGGccgccgGGcGCGGUGCgCCAGGcGCGCg -3'
miRNA:   3'- gUGCUuua---UC-UGCUACG-GGUCC-CGCG- -5'
26728 5' -53 NC_005808.1 + 17920 0.74 0.330164
Target:  5'- cCugGgcGUGGACGugGCCCGcggcGGGCGCg -3'
miRNA:   3'- -GugCuuUAUCUGCuaCGGGU----CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.