miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26729 3' -59.2 NC_005808.1 + 41920 0.69 0.26437
Target:  5'- cGGCcgGC-GCCGCcguaGGCgGCCUGGUg -3'
miRNA:   3'- -UCGaaCGuCGGUGaa--CCGgCGGACCG- -5'
26729 3' -59.2 NC_005808.1 + 41622 0.67 0.355969
Target:  5'- cGGCcagGCGGCCAagUGGCUgcaagcuGCCgugGGCa -3'
miRNA:   3'- -UCGaa-CGUCGGUgaACCGG-------CGGa--CCG- -5'
26729 3' -59.2 NC_005808.1 + 41281 0.74 0.103998
Target:  5'- cGCUUGuCGGCCuggUGGCCGUCgcccugGGCg -3'
miRNA:   3'- uCGAAC-GUCGGugaACCGGCGGa-----CCG- -5'
26729 3' -59.2 NC_005808.1 + 40364 0.69 0.244519
Target:  5'- ----cGCGGCCACgc-GCCGCCUGcuGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaacCGGCGGAC--CG- -5'
26729 3' -59.2 NC_005808.1 + 39758 0.7 0.219994
Target:  5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3'
miRNA:   3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5'
26729 3' -59.2 NC_005808.1 + 39741 0.66 0.383226
Target:  5'- uGGCUcUGCcaacGCUacgGCUUGGCgGgCUGGCc -3'
miRNA:   3'- -UCGA-ACGu---CGG---UGAACCGgCgGACCG- -5'
26729 3' -59.2 NC_005808.1 + 37445 0.73 0.12336
Target:  5'- gGGCgugaGCAGCgAC--GGCCGCCUGcGCg -3'
miRNA:   3'- -UCGaa--CGUCGgUGaaCCGGCGGAC-CG- -5'
26729 3' -59.2 NC_005808.1 + 36211 0.66 0.392309
Target:  5'- cGaggGC-GCCGCggcGGCCGaCCUGGUg -3'
miRNA:   3'- uCgaaCGuCGGUGaa-CCGGC-GGACCG- -5'
26729 3' -59.2 NC_005808.1 + 34359 0.66 0.365483
Target:  5'- cGCUUGaagcgcaAGCUGCUgacGGCCGCCgaccaGCg -3'
miRNA:   3'- uCGAACg------UCGGUGAa--CCGGCGGac---CG- -5'
26729 3' -59.2 NC_005808.1 + 34191 0.66 0.365483
Target:  5'- aAGCgcaCGGCC-C-UGGCCGaCUGGCu -3'
miRNA:   3'- -UCGaacGUCGGuGaACCGGCgGACCG- -5'
26729 3' -59.2 NC_005808.1 + 33928 0.66 0.411834
Target:  5'- gGGCgcgcaGCAGCCGCUgcacacagcgaguacGGCgCGgCCUGGg -3'
miRNA:   3'- -UCGaa---CGUCGGUGAa--------------CCG-GC-GGACCg -5'
26729 3' -59.2 NC_005808.1 + 32812 0.67 0.33995
Target:  5'- cGGCgUGC-GCgACcUGGCCGCgUGGa -3'
miRNA:   3'- -UCGaACGuCGgUGaACCGGCGgACCg -5'
26729 3' -59.2 NC_005808.1 + 31003 0.68 0.307958
Target:  5'- uGCUgcccgGCGGCCAgccGGCgGCCcugGGCg -3'
miRNA:   3'- uCGAa----CGUCGGUgaaCCGgCGGa--CCG- -5'
26729 3' -59.2 NC_005808.1 + 28178 0.71 0.182133
Target:  5'- ----cGguGCCGCa-GGCgCGCCUGGCg -3'
miRNA:   3'- ucgaaCguCGGUGaaCCG-GCGGACCG- -5'
26729 3' -59.2 NC_005808.1 + 27750 0.72 0.15873
Target:  5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3'
miRNA:   3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5'
26729 3' -59.2 NC_005808.1 + 27435 0.66 0.365483
Target:  5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3'
miRNA:   3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5'
26729 3' -59.2 NC_005808.1 + 26541 0.68 0.278318
Target:  5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3'
miRNA:   3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5'
26729 3' -59.2 NC_005808.1 + 25759 0.68 0.300328
Target:  5'- cGCUcgUGCAuccgaacuaugcGCCGCgugaacUGcGCCGCCUGGg -3'
miRNA:   3'- uCGA--ACGU------------CGGUGa-----AC-CGGCGGACCg -5'
26729 3' -59.2 NC_005808.1 + 25744 0.68 0.271272
Target:  5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3'
miRNA:   3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5'
26729 3' -59.2 NC_005808.1 + 24570 0.73 0.130527
Target:  5'- uGGCgagGcCGGCCACggucgGGCCGUCcGGCg -3'
miRNA:   3'- -UCGaa-C-GUCGGUGaa---CCGGCGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.