miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26729 3' -59.2 NC_005808.1 + 11696 0.68 0.285508
Target:  5'- ---cUGCGGCgGaCUUaGCCGCUUGGCg -3'
miRNA:   3'- ucgaACGUCGgU-GAAcCGGCGGACCG- -5'
26729 3' -59.2 NC_005808.1 + 12404 0.68 0.271272
Target:  5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5'
26729 3' -59.2 NC_005808.1 + 12870 0.66 0.374283
Target:  5'- cAGCUUGUuguagAGCCACaggcucgUGGUgucguCGCCUuuGGCg -3'
miRNA:   3'- -UCGAACG-----UCGGUGa------ACCG-----GCGGA--CCG- -5'
26729 3' -59.2 NC_005808.1 + 13168 0.68 0.307958
Target:  5'- cGGCcagUGuCGGCCGCgcUGGgCGCCcuUGGCc -3'
miRNA:   3'- -UCGa--AC-GUCGGUGa-ACCgGCGG--ACCG- -5'
26729 3' -59.2 NC_005808.1 + 13439 0.7 0.2142
Target:  5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3'
miRNA:   3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5'
26729 3' -59.2 NC_005808.1 + 14331 0.66 0.41089
Target:  5'- cAGCgcGCGGUCAUggugcgcaacaUGGUgaGCCUGGCg -3'
miRNA:   3'- -UCGaaCGUCGGUGa----------ACCGg-CGGACCG- -5'
26729 3' -59.2 NC_005808.1 + 15098 0.77 0.063564
Target:  5'- aAGCUgGCGGCCGa--GGCCGCC-GGCa -3'
miRNA:   3'- -UCGAaCGUCGGUgaaCCGGCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 15166 0.72 0.146024
Target:  5'- gGGCcUGCGGCCGCcgGGCgcggugCGCCaGGCg -3'
miRNA:   3'- -UCGaACGUCGGUGaaCCG------GCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 16367 0.67 0.33995
Target:  5'- uGUUcUGCGGCUugUUGGUagUGCC-GGCa -3'
miRNA:   3'- uCGA-ACGUCGGugAACCG--GCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 18065 0.66 0.392309
Target:  5'- cGGCgcggGguGCgUGCUgGGCCGCCgaagccGGCg -3'
miRNA:   3'- -UCGaa--CguCG-GUGAaCCGGCGGa-----CCG- -5'
26729 3' -59.2 NC_005808.1 + 18944 0.67 0.315735
Target:  5'- cGCcuggUGCAGUUGCUgccGCCGCC-GGCu -3'
miRNA:   3'- uCGa---ACGUCGGUGAac-CGGCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 19028 0.69 0.238182
Target:  5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5'
26729 3' -59.2 NC_005808.1 + 21118 0.71 0.190244
Target:  5'- uGCUUGCugguaucgacgcuGCCcaGCUUGGCCGCCguguccgcgcccUGGUu -3'
miRNA:   3'- uCGAACGu------------CGG--UGAACCGGCGG------------ACCG- -5'
26729 3' -59.2 NC_005808.1 + 21747 0.72 0.154816
Target:  5'- gGGC--GCGGCCGCguccacauaggacaGGCCGCCcGGCa -3'
miRNA:   3'- -UCGaaCGUCGGUGaa------------CCGGCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 24570 0.73 0.130527
Target:  5'- uGGCgagGcCGGCCACggucgGGCCGUCcGGCg -3'
miRNA:   3'- -UCGaa-C-GUCGGUGaa---CCGGCGGaCCG- -5'
26729 3' -59.2 NC_005808.1 + 25744 0.68 0.271272
Target:  5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3'
miRNA:   3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5'
26729 3' -59.2 NC_005808.1 + 25759 0.68 0.300328
Target:  5'- cGCUcgUGCAuccgaacuaugcGCCGCgugaacUGcGCCGCCUGGg -3'
miRNA:   3'- uCGA--ACGU------------CGGUGa-----AC-CGGCGGACCg -5'
26729 3' -59.2 NC_005808.1 + 26541 0.68 0.278318
Target:  5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3'
miRNA:   3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5'
26729 3' -59.2 NC_005808.1 + 27435 0.66 0.365483
Target:  5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3'
miRNA:   3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5'
26729 3' -59.2 NC_005808.1 + 27750 0.72 0.15873
Target:  5'- cAGCgUGCGG-CGC-UGGCCGCCaacGGCa -3'
miRNA:   3'- -UCGaACGUCgGUGaACCGGCGGa--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.