miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26729 5' -54.5 NC_005808.1 + 14902 0.66 0.699561
Target:  5'- gUCugCGCGGCGaUCu-GCugCUGGccGg -3'
miRNA:   3'- -AGugGCGUCGC-AGcuUGugGACCuuC- -5'
26729 5' -54.5 NC_005808.1 + 19071 0.66 0.699561
Target:  5'- -gACCGCGuGCGc----CGCCUGGAAGg -3'
miRNA:   3'- agUGGCGU-CGCagcuuGUGGACCUUC- -5'
26729 5' -54.5 NC_005808.1 + 21989 0.66 0.699561
Target:  5'- uUCG-CGCAGCGUgCGGguuucgucgGCGCCUGGc-- -3'
miRNA:   3'- -AGUgGCGUCGCA-GCU---------UGUGGACCuuc -5'
26729 5' -54.5 NC_005808.1 + 18052 0.66 0.695132
Target:  5'- aUCGCCGCGcuGCG-CGAccacgcggucaucCACCUGGAc- -3'
miRNA:   3'- -AGUGGCGU--CGCaGCUu------------GUGGACCUuc -5'
26729 5' -54.5 NC_005808.1 + 7996 0.66 0.688471
Target:  5'- gCACCaCGGCGUCGGACGugccCUUGGc-- -3'
miRNA:   3'- aGUGGcGUCGCAGCUUGU----GGACCuuc -5'
26729 5' -54.5 NC_005808.1 + 41459 0.66 0.688471
Target:  5'- cCGCCGUAGCG-CGAgcuaacgguuACACCgGGccGa -3'
miRNA:   3'- aGUGGCGUCGCaGCU----------UGUGGaCCuuC- -5'
26729 5' -54.5 NC_005808.1 + 5390 0.66 0.688471
Target:  5'- gUCACUGguGCGcgccgCGAGCACCUu---- -3'
miRNA:   3'- -AGUGGCguCGCa----GCUUGUGGAccuuc -5'
26729 5' -54.5 NC_005808.1 + 34316 0.66 0.677324
Target:  5'- cCGCgGCcuggucgauAGCGugcgucagaUCGAACACCUGGGc- -3'
miRNA:   3'- aGUGgCG---------UCGC---------AGCUUGUGGACCUuc -5'
26729 5' -54.5 NC_005808.1 + 37373 0.66 0.676206
Target:  5'- aCACCGUGGCGUCcAACAUCcucgacgUGGGc- -3'
miRNA:   3'- aGUGGCGUCGCAGcUUGUGG-------ACCUuc -5'
26729 5' -54.5 NC_005808.1 + 3763 0.66 0.669493
Target:  5'- cCGCCGCuggacguAGCcUCGGucgugccgaaagccaGCGCCUGGAAu -3'
miRNA:   3'- aGUGGCG-------UCGcAGCU---------------UGUGGACCUUc -5'
26729 5' -54.5 NC_005808.1 + 2839 0.66 0.666132
Target:  5'- cCACgCGCAGCGgCGccAGCACCaGcGAGGg -3'
miRNA:   3'- aGUG-GCGUCGCaGC--UUGUGGaC-CUUC- -5'
26729 5' -54.5 NC_005808.1 + 5023 0.66 0.666132
Target:  5'- aUUACCGacuacuGCGUUGAuauuCGCCUGGuuGg -3'
miRNA:   3'- -AGUGGCgu----CGCAGCUu---GUGGACCuuC- -5'
26729 5' -54.5 NC_005808.1 + 25630 0.66 0.666132
Target:  5'- gUCGCCaGCAGCG-CGucCACCUcGGcGAGu -3'
miRNA:   3'- -AGUGG-CGUCGCaGCuuGUGGA-CC-UUC- -5'
26729 5' -54.5 NC_005808.1 + 29964 0.66 0.666132
Target:  5'- gUCGUCGCGGCGcaCGAcgGCCUGGAu- -3'
miRNA:   3'- -AGUGGCGUCGCa-GCUugUGGACCUuc -5'
26729 5' -54.5 NC_005808.1 + 28475 0.66 0.666132
Target:  5'- gUCGCCGUAGUgGUCGAGCAuCCgcucGGc-- -3'
miRNA:   3'- -AGUGGCGUCG-CAGCUUGU-GGa---CCuuc -5'
26729 5' -54.5 NC_005808.1 + 25086 0.66 0.654907
Target:  5'- cCAgCGCAGCG-CGcccGGCGCCgUGGGAu -3'
miRNA:   3'- aGUgGCGUCGCaGC---UUGUGG-ACCUUc -5'
26729 5' -54.5 NC_005808.1 + 27402 0.67 0.64366
Target:  5'- gUCGCUcuuGUAGuCGUCGcGCGCCUGGc-- -3'
miRNA:   3'- -AGUGG---CGUC-GCAGCuUGUGGACCuuc -5'
26729 5' -54.5 NC_005808.1 + 6627 0.67 0.64366
Target:  5'- cCGCCGcCAGCuUCGcGCGCUUGGccGg -3'
miRNA:   3'- aGUGGC-GUCGcAGCuUGUGGACCuuC- -5'
26729 5' -54.5 NC_005808.1 + 13147 0.67 0.632402
Target:  5'- gUCGCCuGguGCcagGAGCACCUGGGc- -3'
miRNA:   3'- -AGUGG-CguCGcagCUUGUGGACCUuc -5'
26729 5' -54.5 NC_005808.1 + 40576 0.67 0.609896
Target:  5'- aUCGCCuGC-GCGacuucgccagCGAGCGCCUGGGc- -3'
miRNA:   3'- -AGUGG-CGuCGCa---------GCUUGUGGACCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.