miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2673 3' -57 NC_001491.2 + 52096 0.66 0.847337
Target:  5'- cAGCCUccGugGUGCUCgAacuagccuuGAGGGUCGg -3'
miRNA:   3'- -UCGGAc-CugCACGAGgU---------CUUCCAGCg -5'
2673 3' -57 NC_001491.2 + 32320 0.66 0.844143
Target:  5'- cGGCCgccggcucucccgGGcCGUcCUCCGGAGGGgaUCGCc -3'
miRNA:   3'- -UCGGa------------CCuGCAcGAGGUCUUCC--AGCG- -5'
2673 3' -57 NC_001491.2 + 5645 0.67 0.805338
Target:  5'- uGGCCaUGG-CGUgcuaGCUCCGGcuucGGGGUCGa -3'
miRNA:   3'- -UCGG-ACCuGCA----CGAGGUC----UUCCAGCg -5'
2673 3' -57 NC_001491.2 + 80423 0.67 0.796439
Target:  5'- cGGCaCUGGGCGUGuCUCUGGccuuuGAGGUUa- -3'
miRNA:   3'- -UCG-GACCUGCAC-GAGGUC-----UUCCAGcg -5'
2673 3' -57 NC_001491.2 + 120420 0.68 0.768897
Target:  5'- uAGaCCUGGACaUGgcuuCUCCGGAGGcUCGCc -3'
miRNA:   3'- -UC-GGACCUGcAC----GAGGUCUUCcAGCG- -5'
2673 3' -57 NC_001491.2 + 35056 0.69 0.729549
Target:  5'- gGGCCccGGACGUcucggcccucaacGC-CCAGggGGUCcuGCu -3'
miRNA:   3'- -UCGGa-CCUGCA-------------CGaGGUCuuCCAG--CG- -5'
2673 3' -57 NC_001491.2 + 65518 0.69 0.700832
Target:  5'- gAGCCgcGGAUGggcuaGCUCUAuGgcGGUCGCu -3'
miRNA:   3'- -UCGGa-CCUGCa----CGAGGU-CuuCCAGCG- -5'
2673 3' -57 NC_001491.2 + 10110 0.7 0.650312
Target:  5'- aGGCagcGGACGcGCUCCGGAGcGG-CGCc -3'
miRNA:   3'- -UCGga-CCUGCaCGAGGUCUU-CCaGCG- -5'
2673 3' -57 NC_001491.2 + 3695 0.7 0.629944
Target:  5'- cGGCCUGGGCGcccUGgUCCccGGAGcGGcCGCg -3'
miRNA:   3'- -UCGGACCUGC---ACgAGG--UCUU-CCaGCG- -5'
2673 3' -57 NC_001491.2 + 107695 0.71 0.593338
Target:  5'- cAGCCUGGGCGggcucuguaggGCUCCAGucugcccucuuguGG-CGCa -3'
miRNA:   3'- -UCGGACCUGCa----------CGAGGUCuu-----------CCaGCG- -5'
2673 3' -57 NC_001491.2 + 42446 0.72 0.509843
Target:  5'- uGCCUGGACGcGCUUUucgccccccgAGAAGGUgCGUg -3'
miRNA:   3'- uCGGACCUGCaCGAGG----------UCUUCCA-GCG- -5'
2673 3' -57 NC_001491.2 + 2831 0.76 0.328745
Target:  5'- cGGCCUGGGCcgccgGCUCCAGggGcUCGg -3'
miRNA:   3'- -UCGGACCUGca---CGAGGUCuuCcAGCg -5'
2673 3' -57 NC_001491.2 + 70355 1.12 0.001364
Target:  5'- gAGCCUGGACGUGCUCCAGAAGGUCGCg -3'
miRNA:   3'- -UCGGACCUGCACGAGGUCUUCCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.