miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26730 5' -60 NC_005808.1 + 1453 1.07 0.000382
Target:  5'- cCUUCUUGACGGCGCGGUCGGCGGCCUc -3'
miRNA:   3'- -GAAGAACUGCCGCGCCAGCCGCCGGA- -5'
26730 5' -60 NC_005808.1 + 19367 0.78 0.060877
Target:  5'- -----cGA-GGCGCGGUCGGUGGCCg -3'
miRNA:   3'- gaagaaCUgCCGCGCCAGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 14753 0.76 0.090548
Target:  5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3'
miRNA:   3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5'
26730 5' -60 NC_005808.1 + 29321 0.75 0.104159
Target:  5'- aCUUCaaGGCGGUgGCGGUCGcCGGCCa -3'
miRNA:   3'- -GAAGaaCUGCCG-CGCCAGCcGCCGGa -5'
26730 5' -60 NC_005808.1 + 27521 0.74 0.126469
Target:  5'- gCUUCU---CGGCGCGGUCGG-GGUCUu -3'
miRNA:   3'- -GAAGAacuGCCGCGCCAGCCgCCGGA- -5'
26730 5' -60 NC_005808.1 + 20607 0.73 0.129997
Target:  5'- cCUUCgccaGGCGGCGUcgcaGGUCGGUgucGGCCUg -3'
miRNA:   3'- -GAAGaa--CUGCCGCG----CCAGCCG---CCGGA- -5'
26730 5' -60 NC_005808.1 + 39043 0.72 0.166055
Target:  5'- -aUUUauGCGGCGCGGUUGGCGGgaCUg -3'
miRNA:   3'- gaAGAacUGCCGCGCCAGCCGCCg-GA- -5'
26730 5' -60 NC_005808.1 + 21446 0.72 0.175205
Target:  5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3'
miRNA:   3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 18392 0.71 0.179946
Target:  5'- -----cGAUGGCGcCGGU-GGCGGCCa -3'
miRNA:   3'- gaagaaCUGCCGC-GCCAgCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 5413 0.71 0.204316
Target:  5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3'
miRNA:   3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5'
26730 5' -60 NC_005808.1 + 23529 0.7 0.210839
Target:  5'- cCUUCcaGGCGGCgcacGCGGUCGaUGGCCUc -3'
miRNA:   3'- -GAAGaaCUGCCG----CGCCAGCcGCCGGA- -5'
26730 5' -60 NC_005808.1 + 37228 0.7 0.216412
Target:  5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3'
miRNA:   3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5'
26730 5' -60 NC_005808.1 + 34557 0.7 0.222111
Target:  5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3'
miRNA:   3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5'
26730 5' -60 NC_005808.1 + 18457 0.7 0.233891
Target:  5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3'
miRNA:   3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5'
26730 5' -60 NC_005808.1 + 9226 0.7 0.239976
Target:  5'- gUUCU--GCGGCGCGccCGGCGGCa- -3'
miRNA:   3'- gAAGAacUGCCGCGCcaGCCGCCGga -5'
26730 5' -60 NC_005808.1 + 10690 0.69 0.252541
Target:  5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3'
miRNA:   3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5'
26730 5' -60 NC_005808.1 + 13691 0.69 0.252542
Target:  5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3'
miRNA:   3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5'
26730 5' -60 NC_005808.1 + 19321 0.69 0.261656
Target:  5'- cCUUCgaUGAaGGCGCGGUCuucggacaggcgccaGGCGGCg- -3'
miRNA:   3'- -GAAGa-ACUgCCGCGCCAG---------------CCGCCGga -5'
26730 5' -60 NC_005808.1 + 9856 0.69 0.265644
Target:  5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3'
miRNA:   3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5'
26730 5' -60 NC_005808.1 + 17663 0.69 0.272398
Target:  5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3'
miRNA:   3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.