Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26730 | 5' | -60 | NC_005808.1 | + | 37228 | 0.7 | 0.216412 |
Target: 5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3' miRNA: 3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 18457 | 0.7 | 0.233891 |
Target: 5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3' miRNA: 3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 9226 | 0.7 | 0.239976 |
Target: 5'- gUUCU--GCGGCGCGccCGGCGGCa- -3' miRNA: 3'- gAAGAacUGCCGCGCcaGCCGCCGga -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 10690 | 0.69 | 0.252541 |
Target: 5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3' miRNA: 3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 26528 | 0.68 | 0.29349 |
Target: 5'- -aUCU--ACGGCGCcGcgcgCGGCGGCCa -3' miRNA: 3'- gaAGAacUGCCGCGcCa---GCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 1095 | 0.68 | 0.323562 |
Target: 5'- aCUUCaUGuuGGCgGCGGUaGGCGGCa- -3' miRNA: 3'- -GAAGaACugCCG-CGCCAgCCGCCGga -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 41908 | 0.67 | 0.347585 |
Target: 5'- -aUCUUGGgcgcccggcCGGCGCcgccGUaGGCGGCCUg -3' miRNA: 3'- gaAGAACU---------GCCGCGc---CAgCCGCCGGA- -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 10221 | 0.67 | 0.372857 |
Target: 5'- gCUUCcugcugGGCGGC-CGGggccUCGGCGGCg- -3' miRNA: 3'- -GAAGaa----CUGCCGcGCC----AGCCGCCGga -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 14036 | 0.66 | 0.381554 |
Target: 5'- -----cGACGuGCGCgccgcgauGGcCGGCGGCCg -3' miRNA: 3'- gaagaaCUGC-CGCG--------CCaGCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 32069 | 0.66 | 0.398446 |
Target: 5'- ----gUGGCGGCggaaagcGUGGcCGGCGGUCa -3' miRNA: 3'- gaagaACUGCCG-------CGCCaGCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 31370 | 0.66 | 0.408442 |
Target: 5'- --gCUaGugGGCGUGGgcgggaacgUGGCGGUCa -3' miRNA: 3'- gaaGAaCugCCGCGCCa--------GCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 22610 | 0.68 | 0.286321 |
Target: 5'- ---gUUGGCGaguucuaCGCGGacaUCGGCGGCCUg -3' miRNA: 3'- gaagAACUGCc------GCGCC---AGCCGCCGGA- -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 40460 | 0.69 | 0.272399 |
Target: 5'- -----cGGCGGCGCGGUUGacCGGCUg -3' miRNA: 3'- gaagaaCUGCCGCGCCAGCc-GCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 9856 | 0.69 | 0.265644 |
Target: 5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3' miRNA: 3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 13691 | 0.69 | 0.252542 |
Target: 5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3' miRNA: 3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 34557 | 0.7 | 0.222111 |
Target: 5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3' miRNA: 3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 5413 | 0.71 | 0.204316 |
Target: 5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3' miRNA: 3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 21446 | 0.72 | 0.175205 |
Target: 5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3' miRNA: 3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 14753 | 0.76 | 0.090548 |
Target: 5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3' miRNA: 3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5' |
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26730 | 5' | -60 | NC_005808.1 | + | 19367 | 0.78 | 0.060877 |
Target: 5'- -----cGA-GGCGCGGUCGGUGGCCg -3' miRNA: 3'- gaagaaCUgCCGCGCCAGCCGCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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