miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26731 3' -53.8 NC_005808.1 + 8681 0.68 0.634699
Target:  5'- -gCUgcugCGCCGCCCAGguGUgCGc -3'
miRNA:   3'- ggGAauaaGCGGCGGGUCguCAaGCc -5'
26731 3' -53.8 NC_005808.1 + 33129 0.68 0.623496
Target:  5'- gCCCgaagaAUUCGCUGCCUAuCAGgcccUCGGc -3'
miRNA:   3'- -GGGaa---UAAGCGGCGGGUcGUCa---AGCC- -5'
26731 3' -53.8 NC_005808.1 + 32380 0.68 0.612301
Target:  5'- cCCCg-----GCCGCCCAGCAGg---- -3'
miRNA:   3'- -GGGaauaagCGGCGGGUCGUCaagcc -5'
26731 3' -53.8 NC_005808.1 + 11999 0.69 0.578861
Target:  5'- gCCUUuuccaCGUCGgCCAGCAGcgCGGc -3'
miRNA:   3'- gGGAAuaa--GCGGCgGGUCGUCaaGCC- -5'
26731 3' -53.8 NC_005808.1 + 23949 0.69 0.55678
Target:  5'- -------gCGCCGCCCGGCgAGgUCGGc -3'
miRNA:   3'- gggaauaaGCGGCGGGUCG-UCaAGCC- -5'
26731 3' -53.8 NC_005808.1 + 36844 0.69 0.55678
Target:  5'- gCCCUggcgcacUCGCUGCCCGGCGcgcUGGg -3'
miRNA:   3'- -GGGAaua----AGCGGCGGGUCGUcaaGCC- -5'
26731 3' -53.8 NC_005808.1 + 27886 0.69 0.545829
Target:  5'- aUCUUGgcgUGCuCGCCCAGCAcGUcgCGGa -3'
miRNA:   3'- gGGAAUaa-GCG-GCGGGUCGU-CAa-GCC- -5'
26731 3' -53.8 NC_005808.1 + 28178 0.7 0.524145
Target:  5'- gCCg---UUGCCcacGCCCAGCAGgugCGGc -3'
miRNA:   3'- gGGaauaAGCGG---CGGGUCGUCaa-GCC- -5'
26731 3' -53.8 NC_005808.1 + 17624 0.7 0.513426
Target:  5'- gCCUcgaUGUUUGCCGCaucgugCGGCAGUaCGGc -3'
miRNA:   3'- gGGA---AUAAGCGGCGg-----GUCGUCAaGCC- -5'
26731 3' -53.8 NC_005808.1 + 8396 0.7 0.496466
Target:  5'- ------aUCGCCGCCCacgugucgggcagcgAGCAGUUCGcGg -3'
miRNA:   3'- gggaauaAGCGGCGGG---------------UCGUCAAGC-C- -5'
26731 3' -53.8 NC_005808.1 + 10284 0.7 0.492266
Target:  5'- gCCC-UGUagGUCGUCCAGCAccUCGGg -3'
miRNA:   3'- -GGGaAUAagCGGCGGGUCGUcaAGCC- -5'
26731 3' -53.8 NC_005808.1 + 37138 0.71 0.431413
Target:  5'- aCC----UCGCCGCCCGGCGGgaacaUCGu -3'
miRNA:   3'- gGGaauaAGCGGCGGGUCGUCa----AGCc -5'
26731 3' -53.8 NC_005808.1 + 16837 0.71 0.431413
Target:  5'- aUCgUUGc-CGCCGCCCAGCAGcgCGc -3'
miRNA:   3'- -GGgAAUaaGCGGCGGGUCGUCaaGCc -5'
26731 3' -53.8 NC_005808.1 + 7426 0.78 0.171899
Target:  5'- aCCggAUg-GCCGgCCAGCAGUUCGGc -3'
miRNA:   3'- gGGaaUAagCGGCgGGUCGUCAAGCC- -5'
26731 3' -53.8 NC_005808.1 + 7796 0.84 0.072857
Target:  5'- aCCCU---UCGCCGCCCAGCAGgcgcUGGa -3'
miRNA:   3'- -GGGAauaAGCGGCGGGUCGUCaa--GCC- -5'
26731 3' -53.8 NC_005808.1 + 1522 1.12 0.000738
Target:  5'- cCCCUUAUUCGCCGCCCAGCAGUUCGGc -3'
miRNA:   3'- -GGGAAUAAGCGGCGGGUCGUCAAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.