Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26732 | 3' | -54.8 | NC_005808.1 | + | 6621 | 0.66 | 0.648228 |
Target: 5'- --cAGCGgGCgC-GUGGCGCUGCg-- -3' miRNA: 3'- acaUCGCgCGgGuUACUGCGACGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 13298 | 0.66 | 0.636801 |
Target: 5'- uUGcAGCGCGCCgGGgccGGCGUUGUa-- -3' miRNA: 3'- -ACaUCGCGCGGgUUa--CUGCGACGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 12923 | 0.66 | 0.636801 |
Target: 5'- --cGGcCGCGCCCAua-ACGCUagucaGCUUCu -3' miRNA: 3'- acaUC-GCGCGGGUuacUGCGA-----CGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 7252 | 0.66 | 0.613945 |
Target: 5'- aUGUcGGC-CGCCCAGgucuUGAacUGCUGCUUg -3' miRNA: 3'- -ACA-UCGcGCGGGUU----ACU--GCGACGAAg -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 13923 | 0.66 | 0.602539 |
Target: 5'- cGUGGCGCGCCgCGcUGGCGagGCc-- -3' miRNA: 3'- aCAUCGCGCGG-GUuACUGCgaCGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 13188 | 0.66 | 0.602539 |
Target: 5'- cGUGGgcaaCGCGCCCAA-GAUuCUGCUg- -3' miRNA: 3'- aCAUC----GCGCGGGUUaCUGcGACGAag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 1655 | 0.66 | 0.602538 |
Target: 5'- gGUcuGCGCGUCCuguuugcgcGUGAUGCUGCcgCg -3' miRNA: 3'- aCAu-CGCGCGGGu--------UACUGCGACGaaG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 35032 | 0.67 | 0.568519 |
Target: 5'- cGUGGaCGUGUCCAagccgGUGGCGCcGCa-- -3' miRNA: 3'- aCAUC-GCGCGGGU-----UACUGCGaCGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 4789 | 0.67 | 0.546103 |
Target: 5'- ----cUGCGCCCAGcacgccggcUGGCGCUGCg-- -3' miRNA: 3'- acaucGCGCGGGUU---------ACUGCGACGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 12745 | 0.67 | 0.546103 |
Target: 5'- gGUGcCGCGCCCAGacgcuUGGCGC-GCUc- -3' miRNA: 3'- aCAUcGCGCGGGUU-----ACUGCGaCGAag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 8176 | 0.67 | 0.535 |
Target: 5'- ---cGUGCGCCCg--GAUGCUGCc-- -3' miRNA: 3'- acauCGCGCGGGuuaCUGCGACGaag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 27293 | 0.68 | 0.523977 |
Target: 5'- ---cGCGCGCCU--UGGCGaagGCUUCc -3' miRNA: 3'- acauCGCGCGGGuuACUGCga-CGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 25092 | 0.68 | 0.52288 |
Target: 5'- --cAGCGCGCCCGGcGcCGUgggauacagcgggUGCUUCu -3' miRNA: 3'- acaUCGCGCGGGUUaCuGCG-------------ACGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 32858 | 0.68 | 0.513043 |
Target: 5'- --aAGCGCGCCCAccacGAgcaguucgccCGCgGCUUCg -3' miRNA: 3'- acaUCGCGCGGGUua--CU----------GCGaCGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 4682 | 0.68 | 0.508695 |
Target: 5'- --cAGCGCGCCgGAuagcgcggcgagaaUGGCcggcaaguuguugGCUGCUUCg -3' miRNA: 3'- acaUCGCGCGGgUU--------------ACUG-------------CGACGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 15867 | 0.68 | 0.502203 |
Target: 5'- --gGGCGCGCUgGcgGugGCccgGCUUUg -3' miRNA: 3'- acaUCGCGCGGgUuaCugCGa--CGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 42309 | 0.68 | 0.502202 |
Target: 5'- --gAGCGCGCCUuccGGCGCaGCUa- -3' miRNA: 3'- acaUCGCGCGGGuuaCUGCGaCGAag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 8005 | 0.68 | 0.491464 |
Target: 5'- cGUcGGaCGUGCCCu-UGGCGCcaGCUUCg -3' miRNA: 3'- aCA-UC-GCGCGGGuuACUGCGa-CGAAG- -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 2738 | 0.68 | 0.480833 |
Target: 5'- --gAGCGCgGCCC---GGCGCUGCUc- -3' miRNA: 3'- acaUCGCG-CGGGuuaCUGCGACGAag -5' |
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26732 | 3' | -54.8 | NC_005808.1 | + | 289 | 0.69 | 0.429475 |
Target: 5'- aGUAGCuGCGCCgGAaGGCGCgcuCUUCc -3' miRNA: 3'- aCAUCG-CGCGGgUUaCUGCGac-GAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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